PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g042235m | ||||||||
Common Name | CISIN_1g042235mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 225aa MW: 24922.1 Da PI: 8.6046 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 33 | 7.5e-11 | 13 | 62 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T..TSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss..tgklyey 49 r + k +r v+fskRr+g+l KA E + + + a+++ s+ + ++y++ orange1.1g042235m 13 RRDTKEQRAVSFSKRRHGLLNKAAEYCLRTRSQLALLVSSPvsDTTFYTF 62 5567899********************************96336778887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 14.815 | 4 | 64 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.0E-9 | 4 | 65 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.7E-14 | 5 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-5 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-9 | 17 | 62 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 3.3E-5 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MVAVGKRRIP LKRRDTKEQR AVSFSKRRHG LLNKAAEYCL RTRSQLALLV SSPVSDTTFY 60 TFGHSSVDAV LDAFVNNRAP EAADKELVRL GISMFNEVKD LELYDKKISK AIKSDGNLER 120 EGFWEDYEKL GNSDESIGEL GVIVDKLAKA KEKAILRLTD LLASPQVSNS GSCSASASAS 180 ASNVGCASDE QFKFGNNYAC GERFKFGNNH IHEDDNKKEF IKFGT |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A067EMG9 | 1e-164 | A0A067EMG9_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006477889.1 | 1e-163 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17339 | 3 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G46408.1 | 4e-18 | AGAMOUS-like 97 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g042235m |