PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g042156m

Common Name

CISIN_1g042156mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

Dof

Protein Properties

Length: 337aa MW: 37010.6 Da PI: 9.5196

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g042156m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	121.1	4.1e-38	35	95	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 + + +kcprC+s ntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rk k+++ orange1.1g042156m 35 QPQPQKCPRCESLNTKFCYYNNYSLSQPRYFCKTCRRYWTQGGTLRNVPVGGGCRKGKRTK 95 56889***************************************************99976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF02701	1.2E-32	38	93	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.705	39	93	IPR003851	Zinc finger, Dof-type
ProDom	PD007478	1.0E-19	40	84	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	41	77	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 337 aa Download sequence Send to blast
MQQQERGGSS EERKQQDRRL KTMQGGTENQ QQQEQPQPQK CPRCESLNTK FCYYNNYSLS 60 QPRYFCKTCR RYWTQGGTLR NVPVGGGCRK GKRTKTSSVS GEASRASQPP QPPSPPHPNL 120 TTTQQNILSS SNPVITTGPP VLRTKLEPAA ASPSMGSYYP SGGFLSSLAA IQSQSFNPQP 180 LHQAFNVGGA DHHHNIGGSS NLDLLQGFST VPSFGSSHTQ HQQIQQSKIY HHQMGNIDKS 240 ANPMHMMYHT IPSDQENLTI QSRRPGSSTS HHQQHDWHQQ GSFINNSNNP NVPDHDTSLW 300 SISTASANSN NTNTASVSGS LNPNQWRDLP GYGPPP*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006467769.1	0.0	dof zinc finger protein DOF2.1-like
Refseq	XP_024951407.1	0.0	dof zinc finger protein DOF2.1-like
TrEMBL	A0A067GD59	0.0	A0A067GD59_CITSI; Uncharacterized protein
STRING	XP_006467768.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM15986	9	15

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G60200.1	3e-25	TARGET OF MONOPTEROS 6

Link Out ? help Back to Top
Phytozome	orange1.1g042156m