PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g042126m

Common Name

CISIN_1g042126mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 369aa MW: 41550.7 Da PI: 5.0557

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g042126m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.7	2e-05	32	56	1	23
EEETTTTEEESSHHHHHHHHHH..T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt..H 23 y+C+ Cgk ++++ L +H+++ H orange1.1g042126m 32 YSCGLCGKGYRSSKALAQHLNSrsH 56 99******************98666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	5.12E-6	31	64	No hit	No description
SMART	SM00355	0.12	32	56	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	9.847	32	61	IPR007087	Zinc finger, C2H2
Pfam	PF12874	7.2E-4	32	56	No hit	No description
Gene3D	G3DSA:3.30.160.60	7.1E-4	32	59	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE pattern	PS00028	0	34	56	IPR007087	Zinc finger, C2H2
SuperFamily	SSF57667	1.23E-7	134	195	No hit	No description
Pfam	PF12756	3.7E-25	150	251	IPR015880	Zinc finger, C2H2-like
SMART	SM00355	21	199	226	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
VAGVPGVTEA LFLARQAALA QEKNTNETPM TYSCGLCGKG YRSSKALAQH LNSRSHIMRA 60 AQGTSNEEKE KVIIRSISLR DVNKPPPKRE ANNEESEDSD DEWEEVGPDE VLVSEATNSL 120 TNLNVGSPAD DDMEEDDDDG AFEEFDPACC FMCDLPHDAI ENCMVHMHKC HGFFIPDVEY 180 LKDPKGLLTY LGLKVKRDFM CLYCNDRCHP FNSLEAVRKH MEAKRHCKMH FGDGDDEEEA 240 ELEEFYDYSS SYMDEDGKQL ISSSDMANTV ELGGGSELII TRRTDKGTST KTFGSREYLR 300 YYRRKPRPSP ANNVAITAAL ASRYKSMGLA TVQTREHMVR MKVIKEMNRT GVEAMRTRVG 360 MKNNIMVFS

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

VAGVPGVTEA LFLARQAALA QEKNTNETPM TYSCGLCGKG YRSSKALAQH LNSRSHIMRA  60
AQGTSNEEKE KVIIRSISLR DVNKPPPKRE ANNEESEDSD DEWEEVGPDE VLVSEATNSL  120
TNLNVGSPAD DDMEEDDDDG AFEEFDPACC FMCDLPHDAI ENCMVHMHKC HGFFIPDVEY  180
LKDPKGLLTY LGLKVKRDFM CLYCNDRCHP FNSLEAVRKH MEAKRHCKMH FGDGDDEEEA  240
ELEEFYDYSS SYMDEDGKQL ISSSDMANTV ELGGGSELII TRRTDKGTST KTFGSREYLR  300
YYRRKPRPSP ANNVAITAAL ASRYKSMGLA TVQTREHMVR MKVIKEMNRT GVEAMRTRVG  360
MKNNIMVFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5apn_y	4e-16	150	252	185	284	Cytoplasmic 60S subunit biogenesis factor REI1
5apo_y	4e-16	150	252	164	263	CYTOPLASMIC 60S SUBUNIT BIOGENESIS FACTOR REI1
6rzz_u	3e-16	150	252	164	263	Cytoplasmic 60S subunit biogenesis factor REI1
Search in ModeBase

Expression -- UniGene ? help Back to Top
UniGene ID	E-value	Expressed in
Csi.6841	0.0	flower\| fruit

Functional Description ? help Back to Top
Source	Description
UniProt	Pre-60S-associated factor involved in the cytoplasmic maturation of the 60S subunit. Involved in the dissociation and recycling of other late pre-60S factors before newly synthesized large ribosomal subunits enter translation (By similarity). Can complement the growth defect of a yeast mutant lacking REI1 (PubMed:24038679). Required for leaf growth under cold temperature conditions (PubMed:24038679). {ECO:0000250\|UniProtKB:P38344, ECO:0000269\|PubMed:24038679}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006450152.1	0.0	cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
Refseq	XP_006483574.1	0.0	cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
Refseq	XP_006483736.2	0.0	cytoplasmic 60S subunit biogenesis factor REI1 homolog 1-like
Swissprot	Q8H1G5	1e-148	REIL1_ARATH; Cytoplasmic 60S subunit biogenesis factor REI1 homolog 1
TrEMBL	A0A067D502	0.0	A0A067D502_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006483736.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM3429	5	11

Link Out ? help Back to Top
Phytozome	orange1.1g042126m

Publications ? help Back to Top
Schmidt S,Dethloff F,Beine-Golovchuk O,Kopka J The REIL1 and REIL2 proteins of Arabidopsis thaliana are required for leaf growth in the cold. Plant Physiol., 2013. 163(4): p. 1623-39 [PMID:24038679] Beine-Golovchuk O, et al. Plant Temperature Acclimation and Growth Rely on Cytosolic Ribosome Biogenesis Factor Homologs. Plant Physiol., 2018. 176(3): p. 2251-2276 [PMID:29382692]