PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g041956m
Common NameCISIN_1g041956mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family G2-like
Protein Properties Length: 120aa    MW: 13324 Da    PI: 8.5052
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g041956mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like106.51.5e-3347100255
            G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        prlrWtp+LH++Fv+ave+LGG+e+AtPk +l+lm++kgL+++hvkSHLQ+YR+
  orange1.1g041956m  47 PRLRWTPDLHRCFVQAVERLGGQERATPKLVLQLMNIKGLSIAHVKSHLQMYRS 100
                        8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.70243103IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.3E-3143101IPR009057Homeodomain-like
SuperFamilySSF466893.23E-1645101IPR009057Homeodomain-like
TIGRFAMsTIGR015576.9E-2547102IPR006447Myb domain, plants
PfamPF002493.2E-104899IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
EDGEEEDDDE SKTRISASSS NSVVEEGDQR KASSSSGVRP YVRSKVPRLR WTPDLHRCFV  60
QAVERLGGQE RATPKLVLQL MNIKGLSIAH VKSHLQMYRS KKIDDHGQGT QLLPITLLV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A4e-2148102458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B4e-2148102458Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A3e-2148102357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B3e-2148102357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C3e-2148102357Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D3e-2148102357Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A4e-2148102458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C4e-2148102458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D4e-2148102458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F4e-2148102458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H4e-2148102458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J4e-2148102458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015388811.11e-71uncharacterized protein LOC107178351
SwissprotQ700D98e-32MYBF_ARATH; Putative Myb family transcription factor At1g14600
TrEMBLA0A067FLE71e-81A0A067FLE7_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006425115.14e-69(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM36328184
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.13e-46G2-like family protein