PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g041877m
Common NameCISIN_1g041877mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 255aa    MW: 28840.3 Da    PI: 7.7666
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g041877mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox551.4e-173890456
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       + +++ eq+++Le+ Fe  +++  e++ +LA+ lgL+ rq+ +WFqNrRa++k
  orange1.1g041877m 38 KKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWK 90
                       4568889*********************************************9 PP
2HD-ZIP_I/II128.92e-4136127192
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        ekk+rl+ eqvk+LE+sFe  +kLeperK +lar+Lglqprq+a+WFqnrRAR+ktkqlEkdye+Lk++++alk++n++L++++++L++el 
  orange1.1g041877m  36 EKKKRLNLEQVKALEKSFELGNKLEPERKLQLARALGLQPRQIAIWFQNRRARWKTKQLEKDYEVLKKQFEALKADNDSLQAQNKKLHAELV 127
                        69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466892.57E-192694IPR009057Homeodomain-like
PROSITE profilePS5007116.9733292IPR001356Homeobox domain
SMARTSM003893.0E-173596IPR001356Homeobox domain
CDDcd000861.99E-153793No hitNo description
PfamPF000466.0E-153890IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.6E-184099IPR009057Homeodomain-like
PRINTSPR000311.3E-56372IPR000047Helix-turn-helix motif
PROSITE patternPS0002706790IPR017970Homeobox, conserved site
PRINTSPR000311.3E-57288IPR000047Helix-turn-helix motif
PfamPF021834.6E-1692132IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 255 aa     Download sequence    Send to blast
MMKRSMSFSG VNDKCHEDHH VHGDEDLSDD GSQVGEKKKR LNLEQVKALE KSFELGNKLE  60
PERKLQLARA LGLQPRQIAI WFQNRRARWK TKQLEKDYEV LKKQFEALKA DNDSLQAQNK  120
KLHAELVSLK NKDSNNGQVI HLKKENEGSA SNGSDNSSDI NLDISRTQVI TSPVSSSHLT  180
SKQLFPTSTR PAAGSMTQLL QGSSIPDHLQ CLKIDHHQMV QVQDESFCHM FNGIEEQQAT  240
ASSFWQWPGQ QNFH*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18492RRARWKTKQ
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed 3 day after germination (DAG) in first rosette leaf primordia around the veins in the apical part of the leaf and close to the midvein in the basal part of the leaf. At later stage, expressed in new forming veins, and veins and fascicular cambium of mature leaves. {ECO:0000269|PubMed:12644682}.
UniprotTISSUE SPECIFICITY: Widely expressed. {ECO:0000269|PubMed:16055682}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00322DAPTransfer from AT3G01220Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By auxin. {ECO:0000269|PubMed:12644682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006482584.10.0homeobox-leucine zipper protein HAT7
SwissprotQ8LAT01e-78ATB20_ARATH; Homeobox-leucine zipper protein ATHB-20
TrEMBLA0A067FYT80.0A0A067FYT8_CITSI; Uncharacterized protein
STRINGXP_006482584.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30952666
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-74homeobox 3