PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g041847m | ||||||||
Common Name | CISIN_1g041847mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 206aa MW: 22813 Da PI: 4.4236 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 37.8 | 6.2e-12 | 140 | 197 | 2 | 61 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtg 61 +Y++YA GFs+rk+ +ks+ ng +++r+++C+++g+r +++++ + r++r+etrt+ orange1.1g041847m 140 CYSRYAVLEGFSIRKDFVNKSRINGVVVSRRYTCYRQGYRPTKHSA--NLRKPRQETRTE 197 7***************************************999988..667777777764 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.0E-10 | 140 | 196 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MDSCEADVSS QLPEEDGKNE LQMSLRMDVD EGQERENSKD CSVGKSSEST NTECNCPSPS 60 ASSINQSLME IHGEEYQTPG ISSAYKSETE VVDGEGESHT SEVPSSDVFG GGVVVKDEEV 120 TYVIPTVGME FETEDHAYKC YSRYAVLEGF SIRKDFVNKS RINGVVVSRR YTCYRQGYRP 180 TKHSANLRKP RQETRTEEII LCSSS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006469958.1 | 1e-128 | protein FAR1-RELATED SEQUENCE 7-like isoform X1 | ||||
Refseq | XP_006469959.1 | 1e-128 | protein FAR1-RELATED SEQUENCE 7-like isoform X2 | ||||
Refseq | XP_024046859.1 | 1e-128 | protein FAR1-RELATED SEQUENCE 7 | ||||
TrEMBL | A0A067EAG6 | 1e-148 | A0A067EAG6_CITSI; Uncharacterized protein | ||||
STRING | XP_006469958.1 | 1e-128 | (Citrus sinensis) | ||||
STRING | XP_006447184.1 | 1e-128 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2076 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07500.1 | 8e-11 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g041847m |