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Plant Transcription
Factor Database
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Transcription Factor Information
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Basic
Information? help
Back to Top |
| TF ID |
orange1.1g041748m |
| Common Name | CISIN_1g041748mg |
| Organism |
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| Taxonomic ID |
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| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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| Family |
GRAS |
| Protein Properties |
Length: 480aa MW: 55334.8 Da PI: 6.8793 |
| Description |
GRAS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| orange1.1g041748m | genome | ICGC | View CDS |
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| Signature Domain? help Back to Top |
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| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | GRAS | 300.3 | 4.9e-92 | 93 | 476 | 1 | 373 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92
l++lLl A+a ++++ +la + L++l +++s +gd++qR++a+f+ +Laarl+ s y+ ++ ++t+ +ee+ a++ ++ vsP+++
orange1.1g041748m 93 LIHLLLITATAADENNVSLALENLTELYQTVSLTGDSVQRVVAHFADGLAARLLTRRSPFYEMITKQPTE----EEEFLAFTDLYRVSPYFQ 180
689****************************************************99****999888886....788888899********* PP
GRAS 93 fshltaNqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpf 176
++h+taNqaIlea+e++ +++H+iDfd+s+G+QWp+L+q+L++++ ++ s+RiTg+g+ s eel+et++rL +f +++ ++ f
orange1.1g041748m 181 LAHFTANQAILEAFEEQiennnRALHVIDFDVSYGFQWPSLIQSLSEKAtnGNRISFRITGFGR----SIEELQETENRLVSFSKSFrNLVF 268
**************99888887899**********************99745555*********....9*****************857*** PP
GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalf 268
ef+ l + +l ++r k++E++a nlv++l +l ++ ++++L+lv+s++P++v++veqe +++ +Fl rf+e+l+y++a+f
orange1.1g041748m 269 EFQGL----IRGSRLVNIRKKKHETVAANLVFHLNTLK-IYLK----ISDTLNLVRSIKPTIVTLVEQEGSRSPRNFLSRFMESLHYFAAMF 351
****7....55566679999**************9997.3333....367****************************************** PP
GRAS 269 dsleaklpreseerikvErellgreivnvvacegaerre......rhetlekWrerleeaGFkpvplsekaakqaklllr............ 342
dsl+ lp+es++r ++E+ +lg+ei++++ c +++ + r e++e+W++r+e+ F+ +++s+k qaklll+
orange1.1g041748m 352 DSLDDCLPQESNKRLSIEKNYLGKEIKSMLNCDESDNGNydnyypRYERMETWKARMESHEFGGIKMSSKSLIQAKLLLKirthycplqfde 443
********************************998754333334499*******************************97333333322221 PP
GRAS 343 kvksdgyrveee.sgslv.lgWkdrpLvsvSaW 373
+ +++g++v e+ +g ++ lgW+dr L++++aW
orange1.1g041748m 444 ENNNNGFKVFERyDGKAIsLGWQDRCLLTATAW 476
3346677776667777777************** PP
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| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| Sequence ? help Back to Top |
| Protein Sequence Length: 480 aa
Download sequence Send
to blast |
MEDTEEEEEF LALRLAIVAS DSCSVDKQRK RKRITRVSLN SSNISPYHHE GCCVSEGKIF 60
RLLQMREQML KLDHKRKGVV DEDGNNNNKG LHLIHLLLIT ATAADENNVS LALENLTELY 120
QTVSLTGDSV QRVVAHFADG LAARLLTRRS PFYEMITKQP TEEEEFLAFT DLYRVSPYFQ 180
LAHFTANQAI LEAFEEQIEN NNRALHVIDF DVSYGFQWPS LIQSLSEKAT NGNRISFRIT 240
GFGRSIEELQ ETENRLVSFS KSFRNLVFEF QGLIRGSRLV NIRKKKHETV AANLVFHLNT 300
LKIYLKISDT LNLVRSIKPT IVTLVEQEGS RSPRNFLSRF MESLHYFAAM FDSLDDCLPQ 360
ESNKRLSIEK NYLGKEIKSM LNCDESDNGN YDNYYPRYER METWKARMES HEFGGIKMSS 420
KSLIQAKLLL KIRTHYCPLQ FDEENNNNGF KVFERYDGKA ISLGWQDRCL LTATAWHCV*
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