PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g041697m | ||||||||
Common Name | CISIN_1g041697mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 231aa MW: 26183.3 Da PI: 8.9978 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 81.5 | 1.8e-25 | 8 | 138 | 1 | 123 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleev.ikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratk..sgyWka 85 lp Gf+F+P+deelv +yLkkkv+g+ ++l+e i+++++y+++P+++ + + ++++yfF++ +kk+++g+r r++ g W+ orange1.1g041697m 8 LPHGFQFRPSDEELVEHYLKKKVSGTLIPLAEYfIRDCNLYETKPSKIWDshggPFLNADEDLYFFTQLKKKSSKGSRIDRKVGssGGAWQG 99 699************************9998888**************632455333478899******************75544899*** PP NAM 86 tgkdkevlsk.kgelvglkktLvfykgrapkgektdWvm 123 k+++s ++ ++g kk + + k++ pk + t+ v+ orange1.1g041697m 100 EDAGKDIVSGqSKIKIGSKKQFRYEKKDLPKNQATNYVL 138 *******99745667*********************997 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 9.68E-26 | 5 | 142 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 28.077 | 8 | 167 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.1E-15 | 9 | 138 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 231 aa Download sequence Send to blast |
MQEHIPFLPH GFQFRPSDEE LVEHYLKKKV SGTLIPLAEY FIRDCNLYET KPSKIWDSHG 60 GPFLNADEDL YFFTQLKKKS SKGSRIDRKV GSSGGAWQGE DAGKDIVSGQ SKIKIGSKKQ 120 FRYEKKDLPK NQATNYVLCR LRKNQPIGQD KKYSSAKKRK LNDIQHNSNQ SEQVTDTEVE 180 RVLTHQENQQ QNYVHYQEVS CSSTGMMNEQ SLSGGMGFAS SVIEHSSVTD * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 4e-14 | 8 | 138 | 15 | 135 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015387713.1 | 1e-146 | NAC transcription factor 56-like | ||||
Refseq | XP_024041996.1 | 1e-148 | NAC domain-containing protein 83 | ||||
TrEMBL | A0A067D309 | 1e-172 | A0A067D309_CITSI; Uncharacterized protein | ||||
STRING | XP_006437042.1 | 1e-146 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13879 | 3 | 26 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G04070.2 | 2e-15 | NAC domain containing protein 47 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g041697m |