PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g041600m | ||||||||
Common Name | CISIN_1g041600mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | Nin-like | ||||||||
Protein Properties | Length: 161aa MW: 18578.5 Da PI: 8.8146 | ||||||||
Description | Nin-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | RWP-RK | 78.4 | 7.6e-25 | 68 | 118 | 2 | 52 |
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 + +++l dl yF+lpi++AA+ +++c+Tv+K+iCR+ G++RWPhRkiks+ orange1.1g041600m 68 TGKLTLRDLMIYFHLPIEEAARRMKLCPTVVKKICRRDGLHRWPHRKIKSI 118 5689*********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51519 | 16.915 | 58 | 138 | IPR003035 | RWP-RK domain |
Pfam | PF02042 | 3.3E-21 | 70 | 118 | IPR003035 | RWP-RK domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 161 aa Download sequence Send to blast |
FCKKSIENVK EYLVQYCEER KQAGFMMLPD PLSDFYEAVC VGLVLDDNLT TDDYSQPPMT 60 NSVQRERTGK LTLRDLMIYF HLPIEEAARR MKLCPTVVKK ICRRDGLHRW PHRKIKSIQR 120 RMSVASGRLR SNDAEERANA QIEIQRLQEE MAAACAGLTR * |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KX064680 | 1e-159 | KX064680.1 Citrus trifoliata clone 3 RWP-RK domain containing protein (RKD5) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006474671.1 | 1e-109 | uncharacterized protein LOC102621663 | ||||
TrEMBL | A0A067G1W6 | 1e-116 | A0A067G1W6_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006474671.1 | 1e-108 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4076 | 23 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35590.1 | 9e-12 | RWP-RK domain-containing protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g041600m |