PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g041494m
Common NameCISIN_1g041494mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C3H
Protein Properties Length: 280aa    MW: 31210.1 Da    PI: 8.4813
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g041494mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH37.73.5e-12629226
                       -S---SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                       k  lCr+f+r G C+yG+rCkF H+
  orange1.1g041494m  6 KKDLCRNFQR-GSCQYGERCKFLHV 29
                       889*******.*************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902292.62E-6331IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.389431IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-10529IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-9528IPR000571Zinc finger, CCCH-type
SMARTSM003565.2E-6530IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005635Cellular Componentnuclear envelope
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
MMPYKKKDLC RNFQRGSCQY GERCKFLHVT QQQPNPFGFG VQNNPQSKGT NNYNFGNKQN  60
QSKPFENKWT RFSPITGGGV PASRQPDNQP QSANHKCSDP DSCKRIIAED FELERPLWKL  120
TCYGHWKNAP CDIVGDISYE ELRAAAYDDA KCGSSLHSIV ERERNLLNSN LMKFDNLLRN  180
PYTGPCNSAL SGQSPFAAAS PNAFSPTPQD STAPSLSSFN QVGSLPSLEA LTKFVDQLFS  240
GPLHHQIMPL ANQVPFQIPA RLQVLSEQTI FHRQVVVQS*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006453733.11e-168zinc finger CCCH domain-containing protein 16 isoform X2
SwissprotQ9FWS39e-73C3H16_ARATH; Zinc finger CCCH domain-containing protein 16
TrEMBLA0A067F7520.0A0A067F752_CITSI; Uncharacterized protein
STRINGXP_006473927.11e-161(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM107242731
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75340.11e-68C3H family protein