PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g041414m | ||||||||
Common Name | CISIN_1g041414mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | C2H2 | ||||||||
Protein Properties | Length: 153aa MW: 16441.5 Da PI: 8.1503 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.1 | 0.0012 | 29 | 51 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H orange1.1g041414m 29 FECKTCNRQFPSFQALGGHRASH 51 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 7.68E-9 | 27 | 98 | No hit | No description |
Pfam | PF13912 | 7.9E-13 | 28 | 53 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.91 | 29 | 56 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 29 | 51 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 31 | 51 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.8E-10 | 75 | 100 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.58 | 76 | 98 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.66 | 76 | 109 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 78 | 98 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 153 aa Download sequence Send to blast |
MANCLMFMPH GGDFDAVNGV NMAVADRAFE CKTCNRQFPS FQALGGHRAS HKKSRVTEGS 60 GGGVDTQQSP VKPKTHECSV CGLEFAIGQA LGGHMRRHRA GASHANEKLS AFSSLSDTAP 120 LVEKANSRRV LCLDLNLTPY ENDLEFYRLG SN* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006436057.1 | 1e-110 | zinc finger protein ZAT11 | ||||
Refseq | XP_006486056.1 | 1e-110 | zinc finger protein ZAT11-like | ||||
TrEMBL | A0A067FNP3 | 1e-110 | A0A067FNP3_CITSI; Uncharacterized protein | ||||
STRING | XP_006486056.1 | 1e-110 | (Citrus sinensis) | ||||
STRING | XP_006436057.1 | 1e-110 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM531 | 28 | 150 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G28710.1 | 5e-39 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g041414m |