PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g041304m

Common Name

CISIN_1g041304mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 350aa MW: 37713.9 Da PI: 9.7497

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g041304m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.9	0.00033	296	316	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 +C+ Cgk F ++ L++H++++ orange1.1g041304m 296 TCSQCGKLF-KPEKLQKHMKSC 316 6******.********98 PP

Sequence ? help Back to Top
Protein Sequence Length: 350 aa Download sequence Send to blast
MLRNDEEAIT AEQQKQPACS RTEVKEEEIQ QLEDPKMETP RSQSHVQEQE SSPVYAYAYG 60 SACLERSTLT DDTMSMKHER EDTNYNINHI NLNKLVPASL TQKSNIIQKK GTLPSSSSSS 120 SSKSNKKLSS SSSKSNKKLS SSSSSAQFAK SKSCSNGASN ILRNLMKCGA VDTKNGVVVN 180 VNRPPAALVE SKPNTTRLSK SVNLPPAVLD TTGDNDGALN LICRGDQHQL GGSARFFVTT 240 TSTWNNQHHP LYGARKSFDG TTSTTASNNK NKDGFAGPKP VSSAYHYNYK PVGGPTCSQC 300 GKLFKPEKLQ KHMKSCKGMK ASSKSSTTAE PPQSSGQEPS TSSSYLLTN*

Sequence ? help Back to Top

Protein Sequence Length: 350 aa Download sequence Send to blast

MLRNDEEAIT AEQQKQPACS RTEVKEEEIQ QLEDPKMETP RSQSHVQEQE SSPVYAYAYG  60
SACLERSTLT DDTMSMKHER EDTNYNINHI NLNKLVPASL TQKSNIIQKK GTLPSSSSSS  120
SSKSNKKLSS SSSKSNKKLS SSSSSAQFAK SKSCSNGASN ILRNLMKCGA VDTKNGVVVN  180
VNRPPAALVE SKPNTTRLSK SVNLPPAVLD TTGDNDGALN LICRGDQHQL GGSARFFVTT  240
TSTWNNQHHP LYGARKSFDG TTSTTASNNK NKDGFAGPKP VSSAYHYNYK PVGGPTCSQC  300
GKLFKPEKLQ KHMKSCKGMK ASSKSSTTAE PPQSSGQEPS TSSSYLLTN*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024957307.1	0.0	uncharacterized protein DDB_G0271670
TrEMBL	A0A067E445	0.0	A0A067E445_CITSI; Uncharacterized protein
STRING	XP_006483671.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM10586	2	3

Link Out ? help Back to Top
Phytozome	orange1.1g041304m