PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g041101m

Common Name

CISIN_1g041101mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 433aa MW: 48495.1 Da PI: 5.8295

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g041101m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	36.3	1e-11	270	314	5	54
HHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 + + Er+RR++++++++ Lr l+Pk + K++ a+iL A eYIk+L orange1.1g041101m 270 NLITERNRRNKLKDGLFALRALVPKiS------KMDRAAILGDAAEYIKEL 314 5578*******************66......**************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF14215	2.3E-18	11	158	IPR025610	Transcription factor MYC/MYB N-terminal
CDD	cd00083	9.50E-12	264	318	No hit	No description
PROSITE profile	PS50888	14.818	265	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	3.66E-15	265	327	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.1E-15	269	328	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	2.4E-9	269	314	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	3.3E-13	271	320	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 433 aa Download sequence Send to blast
MRDLEKAVEW LRPFVDSKAW DYCVVWKLGD DPSRFIEWLG CCCSGGVGGG FEYVKVKEES 60 GEEQKFSFCR DAHLKHSART KACEALAQLP SFMDLYSGIH GEVVITNQPK WISLANSSDS 120 IASHQSNSTR VLIPVFGGLI ELFAAKHISK DQNIIELVLA HCNTSIEQRV VPAGSSYDVG 180 LDEKCLDILL KENLQNFPSP LQLLTFVPGT QVLSAATRFN THPYNEGSSR GSNPSIEHPS 240 FDSNYGYIAQ NAPLMQPIGN SFAKRPKAKN LITERNRRNK LKDGLFALRA LVPKISKMDR 300 AAILGDAAEY IKELLQEVDK LQDELKENED CEKDNEEMKS FKLDEIHEGT STTYLPASEH 360 NKSFPACGEK GKSEVRVEVN QINDRDFLIK LLCEHERGGF LRLMEAINSL ELQVIDANVT 420 TFNGKVLNIL RVQ

Sequence ? help Back to Top

Protein Sequence Length: 433 aa Download sequence Send to blast

MRDLEKAVEW LRPFVDSKAW DYCVVWKLGD DPSRFIEWLG CCCSGGVGGG FEYVKVKEES  60
GEEQKFSFCR DAHLKHSART KACEALAQLP SFMDLYSGIH GEVVITNQPK WISLANSSDS  120
IASHQSNSTR VLIPVFGGLI ELFAAKHISK DQNIIELVLA HCNTSIEQRV VPAGSSYDVG  180
LDEKCLDILL KENLQNFPSP LQLLTFVPGT QVLSAATRFN THPYNEGSSR GSNPSIEHPS  240
FDSNYGYIAQ NAPLMQPIGN SFAKRPKAKN LITERNRRNK LKDGLFALRA LVPKISKMDR  300
AAILGDAAEY IKELLQEVDK LQDELKENED CEKDNEEMKS FKLDEIHEGT STTYLPASEH  360
NKSFPACGEK GKSEVRVEVN QINDRDFLIK LLCEHERGGF LRLMEAINSL ELQVIDANVT  420
TFNGKVLNIL RVQ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006484318.1	0.0	transcription factor bHLH90
TrEMBL	A0A067H3W5	0.0	A0A067H3W5_CITSI; Uncharacterized protein (Fragment)
STRING	XP_006484318.1	0.0	(Citrus sinensis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM6985	27	42

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10610.1	1e-73	bHLH family protein

Link Out ? help Back to Top
Phytozome	orange1.1g041101m