PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g040948m | ||||||||
Common Name | CISIN_1g040948mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 287aa MW: 32202.5 Da PI: 5.4951 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 49.1 | 7.1e-16 | 25 | 66 | 9 | 50 |
HHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 9 rqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 rq f kR++++ KA+EL +LCd+ v+++ ++++gk+ +++ orange1.1g040948m 25 RQGNFEKRKETLKNKAHELETLCDVMVCLVCYGPDGKVETWP 66 8889*************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 8.4E-6 | 7 | 67 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 12.376 | 9 | 69 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 7.90E-19 | 9 | 86 | No hit | No description |
PRINTS | PR00404 | 8.3E-6 | 11 | 31 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 4.32E-18 | 13 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.6E-14 | 23 | 65 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-6 | 31 | 46 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 8.3E-6 | 46 | 67 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 287 aa Download sequence Send to blast |
MDAETTQVKR KRSVKLIEEH GGNSRQGNFE KRKETLKNKA HELETLCDVM VCLVCYGPDG 60 KVETWPEDKT KVNDMIDKYK ELREMPVLMK KAEQRLDLLE LFESKKQKLM EKKKAFVEKM 120 FSILETKIDE ASSVEELGVV YNKVESKLAS MRETIELAII EEQKNQQFAA PPIRPPVYGN 180 NLLLSDYVSS SSNNNNNNND FGRHESFLFP PSQNHQINGG ENGNIGDNVM LPDNNFLPSE 240 IGNNFMLPDN SLLPGYVHAN KGAWAQENFS GLIGGPCCNC GRGPSS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024948395.1 | 0.0 | agamous-like MADS-box protein AGL103 | ||||
Refseq | XP_024948396.1 | 0.0 | agamous-like MADS-box protein AGL103 | ||||
TrEMBL | A0A067E6X7 | 0.0 | A0A067E6X7_CITSI; Uncharacterized protein | ||||
STRING | XP_006491544.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM566 | 20 | 126 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18650.1 | 6e-15 | AGAMOUS-like 103 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g040948m |