PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g040872m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 205aa MW: 23272.4 Da PI: 7.1361 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 57.2 | 5.6e-18 | 34 | 118 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +++eY+k+ GF v +++s+k +g + tf C ++g++++++ + +++++ +t C+a+l + +dgkw + +l+leHnH l orange1.1g040872m 34 YFKEYGKRKGFPVLRRTSRKD-SDGILRNVTFACGRSGETRSKSVN---ILKPQPNAKTCCNARLGAGLGDDGKWTIRSLNLEHNHVLL 118 79**************99998.8999*************9998777...999**********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.3E-14 | 34 | 118 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 205 aa Download sequence Send to blast |
MEKDIEVEEL EKIEEDDEPI IGMSFDSDVD LFIYFKEYGK RKGFPVLRRT SRKDSDGILR 60 NVTFACGRSG ETRSKSVNIL KPQPNAKTCC NARLGAGLGD DGKWTIRSLN LEHNHVLLTP 120 TKSKYFRCNR SVNSYAKKKL DAFQNLEGSC VDMNMYPHGV LDYCNGLMSL HHMVGDNVYP 180 TPTQNSCMEP QFQPHGHFQQ LLFQ* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.1228 | 7e-80 | fruit |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024034829.1 | 1e-97 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A067DYK5 | 3e-99 | A0A067DYK5_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006477544.1 | 8e-86 | (Citrus sinensis) | ||||
STRING | XP_006484349.1 | 1e-80 | (Citrus sinensis) | ||||
STRING | XP_006487498.1 | 3e-84 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17343 | 3 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G76320.2 | 1e-13 | FAR1-related sequence 4 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g040872m |