PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g040794m
Common NameCISIN_1g040794mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 376aa    MW: 42303.7 Da    PI: 6.5373
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g040794mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.40.00011298320123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C +Cgk F  + + ++H +++
  orange1.1g040794m 298 FMCRKCGKAFAVRGDWRTHEKNC 320
                        89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.58214236IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.64214241IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.8E-6214233IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280216236IPR007087Zinc finger, C2H2
SuperFamilySSF576671.85E-6280318No hitNo description
Gene3DG3DSA:3.30.160.601.1E-5294318IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501578.808298318IPR007087Zinc finger, C2H2
SMARTSM0035549298318IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009860Biological Processpollen tube growth
GO:0010500Biological Processtransmitting tissue development
GO:1990058Biological Processfruit replum development
GO:0005634Cellular Componentnucleus
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MADPYSNFFS GLLKFNNSPN QNYQHYPASQ QQHFAQTNTF AFNQNQSHHP YYFQYQSSPP  60
SPPLREALPL LSLSPRRHEE EAEEEEEEEE EHHQHSCNIA EAAAAMDVDK NKGKLVEESN  120
LFFSSTSSTA TAALHHEDDD ETTAVTVALH IGLPSPSASE MASLLSSSSE ISGHDHNGDH  180
GGDDSSAGYP FNRLNKGQYW IPTPSQILIG PTQFSCPVCC KTFNRYNNMQ MHMWGHGSQY  240
RKGPESLRGT QPTGMLRLPC YCCAPGCRNN IDHPRAKPLK DFRTLQTHYK RKHGIKPFMC  300
RKCGKAFAVR GDWRTHEKNC GKLWYCICGS DFKHKRSLKD HIKAFGNGHA AYGIDGFEEE  360
DEPASEVEQD NESMQ*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006421457.10.0zinc finger protein WIP2
SwissprotQ9SVY11e-146ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A067EPX30.0A0A067EPX3_CITSI; Uncharacterized protein
STRINGXP_006421457.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23928237
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-135C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]