PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g040769m
Common NameCISIN_1g040769mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family HD-ZIP
Protein Properties Length: 258aa    MW: 29368.2 Da    PI: 7.1652
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g040769mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.11.7e-1989141456
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        + ++t++qle Le+ F+++ +++ +++ +LA++lgL+ rq+ vWFqNrRa++k
  orange1.1g040769m  89 KKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWK 141
                        4569************************************************9 PP

2HD-ZIP_I/II117.76.6e-3887179193
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        e+k+rl+++q+++LE+sF+ee kL+p+rK++lareLglqprq+avWFqnrRAR+k+kqlE  y++Lk++yda+++e+ +L++ev +L++ lk
  orange1.1g040769m  87 ERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQLELLYDSLKQEYDAVSREKLKLQEEVMKLKRMLK 178
                        69**************************************************************************************9887 PP

        HD-ZIP_I/II  93 e 93 
                        e
  orange1.1g040769m 179 E 179
                        6 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466899.41E-2075145IPR009057Homeodomain-like
PROSITE profilePS5007118.05883143IPR001356Homeobox domain
SMARTSM003893.8E-1886147IPR001356Homeobox domain
PfamPF000466.4E-1788141IPR001356Homeobox domain
CDDcd000863.46E-1688144No hitNo description
Gene3DG3DSA:1.10.10.603.1E-2193142IPR009057Homeodomain-like
PRINTSPR000319.0E-6114123IPR000047Helix-turn-helix motif
PROSITE patternPS000270118141IPR017970Homeobox, conserved site
PRINTSPR000319.0E-6123139IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0010434Biological Processbract formation
GO:0010582Biological Processfloral meristem determinacy
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0048510Biological Processregulation of timing of transition from vegetative to reproductive phase
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 258 aa     Download sequence    Send to blast
MDWSSTTGNL RTFVPVFPRP ETSFDLLYNY NYDQFPGMDQ MNKHMHAAAA AAAMAEKSSS  60
SIGLIPAAEL MEKNIHHYGS SSTSSQERKK RLTSDQLESL ERSFQEEIKL DPDRKMKLAR  120
ELGLQPRQIA VWFQNRRARW KSKQLELLYD SLKQEYDAVS REKLKLQEEV MKLKRMLKEQ  180
GTSTRNMMNK QVSTGITEVS GEETVESTSV ATINGSFSNK HHQISECNYL FNVDEEFNAA  240
AAPLPSPFWG LLPTSFQ*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135143RRARWKSKQ
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00486DAPTransfer from AT5G03790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006430338.10.0putative homeobox-leucine zipper protein ATHB-51
RefseqXP_006482366.10.0putative homeobox-leucine zipper protein ATHB-51
TrEMBLA0A067F0W50.0A0A067F0W5_CITSI; Uncharacterized protein
STRINGXP_006482366.10.0(Citrus sinensis)
STRINGXP_006430338.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16602888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03790.12e-50homeobox 51