PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | orange1.1g040769m | ||||||||
Common Name | CISIN_1g040769mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
|
||||||||
Family | HD-ZIP | ||||||||
Protein Properties | Length: 258aa MW: 29368.2 Da PI: 7.1652 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 61.1 | 1.7e-19 | 89 | 141 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 + ++t++qle Le+ F+++ +++ +++ +LA++lgL+ rq+ vWFqNrRa++k orange1.1g040769m 89 KKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWK 141 4569************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 117.7 | 6.6e-38 | 87 | 179 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 e+k+rl+++q+++LE+sF+ee kL+p+rK++lareLglqprq+avWFqnrRAR+k+kqlE y++Lk++yda+++e+ +L++ev +L++ lk orange1.1g040769m 87 ERKKRLTSDQLESLERSFQEEIKLDPDRKMKLARELGLQPRQIAVWFQNRRARWKSKQLELLYDSLKQEYDAVSREKLKLQEEVMKLKRMLK 178 69**************************************************************************************9887 PP HD-ZIP_I/II 93 e 93 e orange1.1g040769m 179 E 179 6 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 9.41E-20 | 75 | 145 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 18.058 | 83 | 143 | IPR001356 | Homeobox domain |
SMART | SM00389 | 3.8E-18 | 86 | 147 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 6.4E-17 | 88 | 141 | IPR001356 | Homeobox domain |
CDD | cd00086 | 3.46E-16 | 88 | 144 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.1E-21 | 93 | 142 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.0E-6 | 114 | 123 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 118 | 141 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.0E-6 | 123 | 139 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010434 | Biological Process | bract formation | ||||
GO:0010582 | Biological Process | floral meristem determinacy | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 258 aa Download sequence Send to blast |
MDWSSTTGNL RTFVPVFPRP ETSFDLLYNY NYDQFPGMDQ MNKHMHAAAA AAAMAEKSSS 60 SIGLIPAAEL MEKNIHHYGS SSTSSQERKK RLTSDQLESL ERSFQEEIKL DPDRKMKLAR 120 ELGLQPRQIA VWFQNRRARW KSKQLELLYD SLKQEYDAVS REKLKLQEEV MKLKRMLKEQ 180 GTSTRNMMNK QVSTGITEVS GEETVESTSV ATINGSFSNK HHQISECNYL FNVDEEFNAA 240 AAPLPSPFWG LLPTSFQ* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 135 | 143 | RRARWKSKQ |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00486 | DAP | Transfer from AT5G03790 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_006430338.1 | 0.0 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Refseq | XP_006482366.1 | 0.0 | putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | A0A067F0W5 | 0.0 | A0A067F0W5_CITSI; Uncharacterized protein | ||||
STRING | XP_006482366.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006430338.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G03790.1 | 2e-50 | homeobox 51 |
Link Out ? help Back to Top | |
---|---|
Phytozome | orange1.1g040769m |