PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g040760m | ||||||||
Common Name | CISIN_1g040760mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 109aa MW: 11787.8 Da PI: 6.8092 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 12.1 | 0.00036 | 75 | 97 | 3 | 25 |
HHHHHHHHHHHHHHHHHHHHHHC CS HLH 3 rahnerErrRRdriNsafeeLre 25 +h+ +Er RR++i +++ L+ orange1.1g040760m 75 NSHSLVERVRREKISERMKFLQN 97 58**************9988876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF47459 | 5.67E-5 | 69 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 6.0E-5 | 72 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 109 aa Download sequence Send to blast |
KSLVNSHGEA KQAFGESSSD SNEVEFSGGG GQDEPSTLEG TGGNLLLRGK QGSQTSDQPK 60 EEYIHVRARR GQATNSHSLV ERVRREKISE RMKFLQNLSL AIEETGRS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF146811 | 1e-52 | EF146811.1 Populus trichocarpa clone WS01214_F06 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006484281.1 | 6e-36 | transcription factor bHLH49 isoform X2 | ||||
Refseq | XP_024956728.1 | 8e-36 | transcription factor bHLH49 isoform X1 | ||||
TrEMBL | A0A2H5P8A5 | 4e-71 | A0A2H5P8A5_CITUN; Uncharacterized protein | ||||
STRING | XP_006484279.1 | 3e-35 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5947 | 25 | 43 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G68920.2 | 1e-23 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g040760m |