PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g040635m
Common NameCISIN_1g040635mg, LOC102617847
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 178aa    MW: 20411 Da    PI: 10.4633
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g040635mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF40.73e-131150342
                       --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
             SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                       i+ +s r+vtf kRr+g+ KK +EL +LC++ ++ ii +s
  orange1.1g040635m 11 ISKESVRKVTFKKRRAGLKKKLSELTTLCGVTACAIICAS 50
                       8999********************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004321.3E-16160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006615.923150IPR002100Transcription factor, MADS-box
CDDcd002661.10E-19285No hitNo description
SuperFamilySSF554551.05E-20294IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-6323IPR002100Transcription factor, MADS-box
PfamPF003193.7E-141148IPR002100Transcription factor, MADS-box
PRINTSPR004042.2E-62338IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 178 aa     Download sequence    Send to blast
MGRRRVQHEL ISKESVRKVT FKKRRAGLKK KLSELTTLCG VTACAIICAS FDHQPEIWPS  60
PAEAVRVLDK FNNFPIKRRG KYMMNQNTFL SKKISNLFER MRKERKKNRG LEMDLMFTQC  120
LAGKDMNNFD CLEDLKDLDH LLKEKIKVIA DKIECEMGLK SIPANTDGHN IRPTKGG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RRRVQHELISKESVRKVTFKKRR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006473883.11e-129agamous-like MADS-box protein AGL80
TrEMBLA0A067DE061e-128A0A067DE06_CITSI; Uncharacterized protein
STRINGXP_006473883.11e-129(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22590.25e-34AGAMOUS-like 87