PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g040614m

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

HRT-like

Protein Properties

Length: 476aa MW: 52941.6 Da PI: 9.847

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g040614m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	55	1.3e-17	232	262	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l+dGsvC+++Pv+ RKRC eH GmRi orange1.1g040614m 232 ICGVSLGDGSVCQMPPVEQRKRCIEHRGMRI 262 8*****************************7 PP
2	HRT-like	52.9	6e-17	352	382	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv l+ G++C+rqPvkgR RCe+HKG +i orange1.1g040614m 352 ICGVELGGGTFCTRQPVKGRVRCEQHKGWKI 382 8***************************775 PP

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 476 aa Download sequence Send to blast
MEAALLAIIA RIQREDCERT NHDSQFSKWK ELVGPSDWEN HSHGKEGAER YKVHNLPNDT 60 GPGLYELGIA VPGAGVIVVY VGQAESVRAR LQAYGRTGAH LNSGCDSGRY FEDIFRRGYS 120 IVYRSAPMKN KEDAEKTERK ILDKFDYAWN KGNNGKRRHA DVRRKLDEVA SNNIQFPKTI 180 RNLLRFNHWP ADIKIKASPE GHNFLPQIIK FTKSQPRLVL DRYGADEGHT GICGVSLGDG 240 SVCQMPPVEQ RKRCIEHRGM RIRASTLTMK GKAKVCDVDP TKLPMVAQKC SVSEGEERNR 300 RKNCGSNSKS TGSSQYGHDA YVDSNAPGAL NSPEMYRQGR VQSKAKLQYD TICGVELGGG 360 TFCTRQPVKG RVRCEQHKGW KIQGTKSTSV AQDHKSDVYG ASYGSFVCGA QTLDGSYCRR 420 QVKANTKCWQ HSDKSLTIRS WSDWNYGGSS LCGAPTRNGS SCRRSVKGGG RCWQH*

Sequence ? help Back to Top

Protein Sequence Length: 476 aa Download sequence Send to blast

MEAALLAIIA RIQREDCERT NHDSQFSKWK ELVGPSDWEN HSHGKEGAER YKVHNLPNDT  60
GPGLYELGIA VPGAGVIVVY VGQAESVRAR LQAYGRTGAH LNSGCDSGRY FEDIFRRGYS  120
IVYRSAPMKN KEDAEKTERK ILDKFDYAWN KGNNGKRRHA DVRRKLDEVA SNNIQFPKTI  180
RNLLRFNHWP ADIKIKASPE GHNFLPQIIK FTKSQPRLVL DRYGADEGHT GICGVSLGDG  240
SVCQMPPVEQ RKRCIEHRGM RIRASTLTMK GKAKVCDVDP TKLPMVAQKC SVSEGEERNR  300
RKNCGSNSKS TGSSQYGHDA YVDSNAPGAL NSPEMYRQGR VQSKAKLQYD TICGVELGGG  360
TFCTRQPVKG RVRCEQHKGW KIQGTKSTSV AQDHKSDVYG ASYGSFVCGA QTLDGSYCRR  420
QVKANTKCWQ HSDKSLTIRS WSDWNYGGSS LCGAPTRNGS SCRRSVKGGG RCWQH*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006475410.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2
Refseq	XP_024033723.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2 isoform X1
TrEMBL	A0A2H5PDL4	0.0	A0A2H5PDL4_CITUN; Uncharacterized protein
TrEMBL	V4WDV6	0.0	V4WDV6_9ROSI; Uncharacterized protein
STRING	XP_006451429.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2954	27	63

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	8e-73	effector of transcription2

Link Out ? help Back to Top
Phytozome	orange1.1g040614m