PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g040555m
Common NameCISIN_1g040555mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family TALE
Protein Properties Length: 314aa    MW: 35263.2 Da    PI: 9.1486
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g040555mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox32.71.2e-101351721954
                        HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS
           Homeobox  19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 
                        +e+  ++yp+ ++++ LAk++gL+++qV++WF N R +
  orange1.1g040555m 135 YENflHPYPTDSDKQILAKQTGLSKNQVSNWFINARVR 172
                        554559******************************88 PP
2BELL78.59.6e-2620771572
               BELL 15 lleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeqi 72
                       l  +V+ +Yk y++q+q v++sFe+vaglg+a+pY+s+A kaiS+hF cLk+ai +qi
  orange1.1g040555m 20 LALKVYWKYKLYCQQMQSVVASFETVAGLGHAAPYISFAFKAISKHFCCLKNAILDQI 77
                       4457999*************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005745.5E-4175IPR006563POX domain
PfamPF075262.3E-201873IPR006563POX domain
PROSITE profilePS5007112.762113176IPR001356Homeobox domain
SMARTSM003891.5E-11116180IPR001356Homeobox domain
CDDcd000863.66E-13116177No hitNo description
SuperFamilySSF466898.13E-18117183IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.0E-26119180IPR009057Homeodomain-like
PfamPF059201.7E-18133172IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
SGIEASYVSS KLAWHELQLL ALKVYWKYKL YCQQMQSVVA SFETVAGLGH AAPYISFAFK  60
AISKHFCCLK NAILDQIHVS GSKTVSDKNA NNDTTEPGCS SHKPVQKLGF LRPPHWRSQR  120
ALPDHAVAVL KTWLYENFLH PYPTDSDKQI LAKQTGLSKN QVSNWFINAR VRLWKPMVEE  180
VHMLEIGQTQ TTSEATNSNF GVPSDHLNTL FPEKLYQATQ ILQAEHVPTK HCRNKRAQAP  240
EQNEEQKNAC LSNLPSDQHI GFSGSSGVTL ALALNQNDGN DLSRPFPLKQ IRKLLVNHKI  300
SILDKDFKEH LMP*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006486540.10.0BEL1-like homeodomain protein 9
TrEMBLA0A067G1900.0A0A067G190_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006486540.10.0(Citrus sinensis)
STRINGXP_006435589.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM1761579
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G02030.17e-61TALE family protein