PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g040553m
Common NameCISIN_1g040553mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family NAC
Protein Properties Length: 221aa    MW: 25505.7 Da    PI: 7.8968
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g040553mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM32.72.1e-102111358128
                NAM  58 wyfFskrdkkyatgkrknratksgyWkatgk.dkevlskkgelvglkktLvfy.......................k..grapkgektdWvm 123
                        +yfF+ +       +r nr++ +gyWk+tg  d ++ s kg+ +g kktLv+y                       +   +++++ +t+W+m
  orange1.1g040553m  21 MYFFTWHTY---IRNRLNRVAGNGYWKETGGnDIQIGS-KGNPIGYKKTLVYYqfqgnyskgdatksvfyqyqyqyQgnYSEKDAMRTSWIM 108
                        366666544...3579***********99872566666.999***********776666666665555555555442324777778999999 PP

                NAM 124 heyrl 128
                        +eyr+
  orange1.1g040553m 109 QEYRI 113
                        99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100516.8961144IPR003441NAC domain
PfamPF023654.3E-521113IPR003441NAC domain
SuperFamilySSF1019413.01E-1421144IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 221 aa     Download sequence    Send to blast
MNACARTAKF QRKGERIMYF MYFFTWHTYI RNRLNRVAGN GYWKETGGND IQIGSKGNPI  60
GYKKTLVYYQ FQGNYSKGDA TKSVFYQYQY QYQGNYSEKD AMRTSWIMQE YRINDQHVPP  120
APYTQREANL MKNNKWLLCK IYKQQTEFEN GDELDTNVCS INTDMDTGST GFSIPNPSAS  180
SKRGEIECNC CAALCLMCKQ LRLGCAADEE EDAFTQMENL *
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024958484.11e-154NAC domain-containing protein 46-like
RefseqXP_024958485.11e-154NAC domain-containing protein 46-like
RefseqXP_024958486.11e-154NAC domain-containing protein 46-like
TrEMBLA0A067ES331e-166A0A067ES33_CITSI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77450.14e-13NAC domain containing protein 32