PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g040546m
Common NameCISIN_1g040546mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 226aa    MW: 25652.1 Da    PI: 10.5173
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g040546mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.98.9e-1460107355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        ++h+e+ErrRR riN+ +++Lr++lP++      K++Ka++L k+++ +++Lq
  orange1.1g040546m  60 KKHSEAERRRRLRINDQYDNLRKILPNL-----VKVDKASVLAKTIKTVRELQ 107
                        68*************************9.....7*****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.9757106IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.3E-1160107IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.31E-960111No hitNo description
SuperFamilySSF474592.22E-1461121IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.4E-1461115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.1E-1163112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF550216.64E-5143206No hitNo description
Gene3DG3DSA:3.30.70.2601.3E-5144205No hitNo description
CDDcd048731.96E-4146191No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MVLLQQLERG VKPVQSYYNS MTYLKQLSLT QGSISSNIIC YPSLISKPIS KVEAKELAAK  60
KHSEAERRRR LRINDQYDNL RKILPNLVKV DKASVLAKTI KTVRELQRTV REQKALCQVH  120
EECVFPSEAN ELSLRNCNRD RGMLKVTLSC EDQPELMSDL SRALRSVKGR LVRAEMVPVG  180
GRIKCVLWVQ GFKGNEGMVM LKRALNLVID RPVSPGNSSK LRFYH*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015388414.11e-163transcription factor bHLH131
TrEMBLA0A067FBL51e-163A0A067FBL5_CITSI; Uncharacterized protein
STRINGXP_006466570.11e-159(Citrus sinensis)
STRINGXP_006426282.11e-160(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM139392025
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38070.17e-49bHLH family protein