PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g040406m
Common NameCISIN_1g040406mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ARR-B
Protein Properties Length: 567aa    MW: 61558 Da    PI: 6.4623
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g040406mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like75.57.4e-24141194155
            G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                        k++++Wt+ LH+rF++a++++   ekA+Pk+ile+m+v+gLt+e+v+SHLQkYR+
  orange1.1g040406m 141 KAKVVWTNSLHNRFLQAIRHI-TLEKAVPKKILEFMNVPGLTRENVASHLQKYRI 194
                        6799*****************.9*******************************6 PP
2Response_reg501.6e-1716644109
                        ESEEEEESSCTTSEHHHHHHHHHHHTTTSEEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
       Response_reg  44 pDlillDiempgmdGlellkeireeepklpiivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                        +Dl+++D+ mp+m+Glel kei+ee  +lp++v+++ + e+ + + l  Ga  + +Kp++p++l++
  orange1.1g040406m   1 IDLVITDLHMPEMNGLELQKEINEEFIHLPVMVMSSDDRESVIMKSLASGAVFYMVKPVNPDALRN 66 
                        6**************************************************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF000724.2E-14166IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.04E-18171No hitNo description
Gene3DG3DSA:3.40.50.23002.2E-21179No hitNo description
SuperFamilySSF521721.57E-19173IPR011006CheY-like superfamily
PROSITE profilePS5011027.978172IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS512949.696138197IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.5E-24139198IPR009057Homeodomain-like
SuperFamilySSF466894.48E-18139198IPR009057Homeodomain-like
TIGRFAMsTIGR015571.6E-24141194IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 567 aa     Download sequence    Send to blast
IDLVITDLHM PEMNGLELQK EINEEFIHLP VMVMSSDDRE SVIMKSLASG AVFYMVKPVN  60
PDALRNVWQY AVTSKKGKSI FTEEKSSLAN GSSAEKISFL HDIVSGSSMI EEKESKTNSK  120
RKASKRRKDE LEGENAAAPK KAKVVWTNSL HNRFLQAIRH ITLEKAVPKK ILEFMNVPGL  180
TRENVASHLQ KYRIFLKRVA DDGINAALKN FNHRSSLASG RTSMMLQEVQ DYAQAIEKQL  240
QMRTSPFIPR YGRGISELNG NTSFGSIGLQ SHNSLSHVGL LGVQDNFHQP FFGNTTYPLY  300
QANPGTTFGT GLIDMGTNSF SCGGLSGGLM NGTNSNQIFH QKSKLRPDPY DNNTGASSLK  360
GFGASGLEKM WTINNNPYLN YAGIRLKNDG DQLVGAGEVG LNVKGDAGAG NEGATFHHLP  420
LGYSSSPAGF AVGNEQEHTS VLPPLSLSQQ QYCLGKKVEN DFTFGLMNDA NASVNDDTAQ  480
PGRLGEGADF GDLLFDLSDF QFLFQPQGDG EGALNPNIGS GSGSHQPELN RPINQSQNPV  540
LPSAFADNAS GPWNEPTLEQ ACPILN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1irz_A6e-22138200264ARR10-B
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015389485.10.0uncharacterized protein LOC102607605
TrEMBLA0A067F1W80.0A0A067F1W8_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006490467.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM162131014
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G07210.11e-51response regulator 21