PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g040161m | ||||||||
Common Name | CISIN_1g040161mg, LOC102612105 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | Dof | ||||||||
Protein Properties | Length: 367aa MW: 39163.4 Da PI: 9.1537 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.5 | 7e-39 | 85 | 144 | 3 | 62 |
zf-Dof 3 ekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 +++l+cprCds+ntkfCyynny+l+qPr+fCk+CrryWtkGGalrnvP+Ggg+rknk+ss orange1.1g040161m 85 NQNLRCPRCDSSNTKFCYYNNYNLTQPRHFCKTCRRYWTKGGALRNVPIGGGCRKNKSSS 144 68899****************************************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 1.3E-32 | 86 | 142 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-25 | 86 | 141 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.516 | 88 | 142 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 90 | 126 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MIQELLGAAG FISGDRKISI TGSIFEGTTS PLPPCTTTTT ATVTTTTATA APPPPPPPLP 60 TTTTSNTDSN IGNNTNNTSS NSGNNQNLRC PRCDSSNTKF CYYNNYNLTQ PRHFCKTCRR 120 YWTKGGALRN VPIGGGCRKN KSSSTVTAAS FGKSSSSSSA ANKMKTVAYE IGRGGFVHHP 180 HEYYSSTPIM WNNSPHNSQL LALLRTSQNP NINPTGPSTS TSSVRVKEEQ GVIGTHHVIK 240 GEPVGDTAAV LNSGTMVFNP LSQQLQVPSQ LGLWKNNQHQ IQAPQQNGFL VGHEVQNSGV 300 QELYQRFKSS TNNYYADHLA SPVVLSNAAS STTTILESAP VAGGELGYWN PVFSWSDLST 360 TNGSYP* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF144749 | 3e-46 | EF144749.1 Populus trichocarpa clone WS01117_M16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006466656.1 | 0.0 | dof zinc finger protein 1 | ||||
Refseq | XP_024036497.1 | 0.0 | dof zinc finger protein 1 | ||||
TrEMBL | A0A067GV74 | 0.0 | A0A067GV74_CITSI; Uncharacterized protein | ||||
TrEMBL | V4SPL7 | 0.0 | V4SPL7_9ROSI; Uncharacterized protein | ||||
STRING | XP_006466656.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006425821.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM16000 | 9 | 15 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60200.1 | 3e-33 | TARGET OF MONOPTEROS 6 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g040161m |
Entrez Gene | 102612105 |