PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g040046m | ||||||||
Common Name | CISIN_1g040046mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MIKC_MADS | ||||||||
Protein Properties | Length: 222aa MW: 25901.6 Da PI: 10.1032 | ||||||||
Description | MIKC_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 89.1 | 2.4e-28 | 9 | 58 | 1 | 50 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 krien +nrqvtfskRrng++KKA+EL vLCda+v++i+ sstgk++ey orange1.1g040046m 9 KRIENATNRQVTFSKRRNGLFKKAQELTVLCDAKVSIIMCSSTGKVQEYV 58 79***********************************************7 PP | |||||||
2 | K-box | 74.5 | 3e-25 | 71 | 166 | 1 | 96 |
K-box 1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenk 92 yq++ + +l+++++e++q++l++Lk+ + nL++e+R++lGe+L++Lslk L Leq++++ l+ iR++K + + qi + +kk ++ +een+ orange1.1g040046m 71 YQRRLKIDLWSSQYEKMQENLKNLKEVNINLKKEIRQRLGESLNDLSLKKLSDLEQDVDNCLRIIRERKLRAISGQIVTHRKKVRREEEENR 162 56666778************************************************************************************ PP K-box 93 aLrk 96 +Lr+ orange1.1g040046m 163 KLRN 166 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 30.712 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 7.8E-39 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 2.42E-34 | 2 | 72 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-27 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.31E-34 | 3 | 95 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 1.2E-23 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-27 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.8E-27 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF01486 | 1.7E-17 | 82 | 166 | IPR002487 | Transcription factor, K-box |
PROSITE profile | PS51297 | 14.22 | 84 | 176 | IPR002487 | Transcription factor, K-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 222 aa Download sequence Send to blast |
MARGKIQIKR IENATNRQVT FSKRRNGLFK KAQELTVLCD AKVSIIMCSS TGKVQEYVSS 60 STTTKQLLDE YQRRLKIDLW SSQYEKMQEN LKNLKEVNIN LKKEIRQRLG ESLNDLSLKK 120 LSDLEQDVDN CLRIIRERKL RAISGQIVTH RKKVRREEEE NRKLRNGFII NAKEEDQHYE 180 LVDNEGHYDS VIRFQNGGPG IFALRLQPNE PLSSQWMSIH E* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5f28_A | 6e-15 | 1 | 60 | 1 | 60 | MEF2C |
5f28_B | 6e-15 | 1 | 60 | 1 | 60 | MEF2C |
5f28_C | 6e-15 | 1 | 60 | 1 | 60 | MEF2C |
5f28_D | 6e-15 | 1 | 60 | 1 | 60 | MEF2C |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed during flower development in stamens and petals. {ECO:0000269|PubMed:17920788}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006435093.2 | 1e-161 | floral homeotic protein DEFICIENS | ||||
Swissprot | E0CPH4 | 1e-93 | AP3_VITVI; Agamous-like MADS-box protein AP3 | ||||
TrEMBL | A0A067HAQ4 | 1e-160 | A0A067HAQ4_CITSI; Uncharacterized protein | ||||
STRING | XP_006435093.1 | 1e-161 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM22838 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G54340.1 | 4e-66 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g040046m |
Publications ? help Back to Top | |||
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