PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g040019m
Common NameCISIN_1g040019mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 167aa    MW: 18312.2 Da    PI: 4.9755
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g040019mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH23.11.4e-0719581054
                       HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       + RR+ri +++  L+el+P++      K + a++L + v+Y+k L
  orange1.1g040019m 19 QLRRERIADRMRALQELVPSC-----NKTDRAAMLDEIVDYVKFL 58
                       56******************8.....6****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.258958IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-51958IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.8E-51964IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474595.23E-121969IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.56E-82163No hitNo description
Gene3DG3DSA:4.10.280.101.7E-122268IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 167 aa     Download sequence    Send to blast
MAVCLCCHQQ MFSLFFVVQL RRERIADRMR ALQELVPSCN KTDRAAMLDE IVDYVKFLRL  60
QVKVLSMSRL GAAGAVAQLV ADVPLSSALE GESIDGGSSQ PEWEKWSNDG TEQQVAKLME  120
EDIGAAMQFL QSKALCIMPI SLASAIYRTR QPDAPAFVKP ESSTPS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtRequired for ovule fertilization. {ECO:0000269|PubMed:15634699}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024039682.11e-103transcription factor UNE12 isoform X2
RefseqXP_024952087.11e-103transcription factor UNE12-like isoform X2
SwissprotO227685e-67UNE12_ARATH; Transcription factor UNE12
TrEMBLA0A067EDB21e-118A0A067EDB2_CITSI; Uncharacterized protein
TrEMBLA0A2H5NWV41e-117A0A2H5NWV4_CITUN; Uncharacterized protein
STRINGXP_006471682.11e-101(Citrus sinensis)
STRINGXP_006432927.11e-101(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16112888
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G02590.38e-62bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]