PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g039976m
Common NameCISIN_1g039976mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family ERF
Protein Properties Length: 439aa    MW: 48792 Da    PI: 5.4684
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g039976mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.11.9e-17191241256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr+++ +g+WvAeIr p++   r+r +lg+f+ ae+Aa a+++ + kl+ge
  orange1.1g039976m 191 LYRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDRAEDAALAYDREAFKLRGE 241
                        59******9.**********955...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.04E-32190250No hitNo description
SMARTSM003801.8E-38191254IPR001471AP2/ERF domain
SuperFamilySSF541716.34E-22191249IPR016177DNA-binding domain
PROSITE profilePS5103222.286191248IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.9E-31191249IPR001471AP2/ERF domain
PRINTSPR003678.4E-10192203IPR001471AP2/ERF domain
PfamPF008478.4E-11192241IPR001471AP2/ERF domain
PRINTSPR003678.4E-10214230IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009651Biological Processresponse to salt stress
GO:2000070Biological Processregulation of response to water deprivation
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MAASKNSSKS EKGVDEATEE MVRSQDWEID KGKDFDLSSF ERRQQWRPVL DEASVSQRPL  60
KKIPSASTLG SSSSRLVFPF AFDTSQQAIQ FPQQFATSQL QTPLPNFHPP IQPAQTQQQM  120
ISFSAHQQQQ GFPFFAGESM LPHQQHQRQL LQYWSDALNL SPRGRLMMNR IGPDGRPLFR  180
PQAQPLNTTK LYRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDRAEDAALA YDREAFKLRG  240
ENARLNFPEL FLNKDKAAVS TDPGSNISSP PSPYESSMPN RLQTQHAQNS LNSQVMSSEP  300
IPAPPPQPKV EIPDSESGLG SSEATASDDV LAAAEGSGSG EGVSGSQELA WGEMAEAWFN  360
AIPAGWGPGS PVWDDFDSSN NLLMPANLPF VNQSQQEFPD SDRQRQHDNS VSAASSTSPP  420
CPMKPFFWKD QDHPQDSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A2e-19190248160ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006447343.10.0ethylene-responsive transcription factor ERF053
RefseqXP_006491642.10.0ethylene-responsive transcription factor ERF053
TrEMBLA0A067EB850.0A0A067EB85_CITSI; Uncharacterized protein
STRINGXP_006491642.10.0(Citrus sinensis)
STRINGXP_006447343.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21412775
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G20880.11e-47ERF family protein