PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g039972m
Common NameCISIN_1g039972mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 170aa    MW: 18988.4 Da    PI: 7.987
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g039972mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.71.3e-103879854
                       HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       + r+RR+ri ++f  L++++P       +K++ a++L +A++Y+k L
  orange1.1g039972m 38 AARQRRHRISDRFKILQSMVPGG-----TKMDTASMLDEAINYVKFL 79
                       569******************87.....8****************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.0563079IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.75E-143594IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.17E-133683No hitNo description
Gene3DG3DSA:4.10.280.103.8E-123681IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.7E-133685IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.6E-83979IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 170 aa     Download sequence    Send to blast
MEYVNAKTLA SGKGNKKKKS SGSKSNPMKL STDPQSVAAR QRRHRISDRF KILQSMVPGG  60
TKMDTASMLD EAINYVKFLK AVIWFHENII NFADHHHHEH DPPVAFGQLP GSFPYSPESL  120
YSSINNLAAA PVPQQDSMQA SETQPFQDFN VFQGEESETL MHLDGFMKY*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015386693.11e-124transcription factor bHLH87
SwissprotQ9M0412e-31BH140_ARATH; Transcription factor bHLH140
TrEMBLA0A067F0N61e-124A0A067F0N6_CITSI; Uncharacterized protein
STRINGXP_006429448.11e-123(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM152901418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.15e-33APRATAXIN-like
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]