PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g039972m | ||||||||
Common Name | CISIN_1g039972mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 170aa MW: 18988.4 Da PI: 7.987 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 32.7 | 1.3e-10 | 38 | 79 | 8 | 54 |
HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + r+RR+ri ++f L++++P +K++ a++L +A++Y+k L orange1.1g039972m 38 AARQRRHRISDRFKILQSMVPGG-----TKMDTASMLDEAINYVKFL 79 569******************87.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 16.056 | 30 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 2.75E-14 | 35 | 94 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 1.17E-13 | 36 | 83 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 3.8E-12 | 36 | 81 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 4.7E-13 | 36 | 85 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 5.6E-8 | 39 | 79 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MEYVNAKTLA SGKGNKKKKS SGSKSNPMKL STDPQSVAAR QRRHRISDRF KILQSMVPGG 60 TKMDTASMLD EAINYVKFLK AVIWFHENII NFADHHHHEH DPPVAFGQLP GSFPYSPESL 120 YSSINNLAAA PVPQQDSMQA SETQPFQDFN VFQGEESETL MHLDGFMKY* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_015386693.1 | 1e-124 | transcription factor bHLH87 | ||||
Swissprot | Q9M041 | 2e-31 | BH140_ARATH; Transcription factor bHLH140 | ||||
TrEMBL | A0A067F0N6 | 1e-124 | A0A067F0N6_CITSI; Uncharacterized protein | ||||
STRING | XP_006429448.1 | 1e-123 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM15290 | 14 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01310.1 | 5e-33 | APRATAXIN-like |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g039972m |
Publications ? help Back to Top | |||
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