PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g039708m | ||||||||
Common Name | CISIN_1g039708mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB | ||||||||
Protein Properties | Length: 512aa MW: 55326.1 Da PI: 5.9546 | ||||||||
Description | MYB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.7 | 2e-16 | 23 | 70 | 1 | 48 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 +g+WT+ Ed +l ++vk++G g+W+++ + g+ R++k+c++rw ++l orange1.1g039708m 23 KGPWTAAEDAILMEYVKKHGEGNWNAVQKNSGLMRCGKSCRLRWANHL 70 79******************************************9986 PP | |||||||
2 | Myb_DNA-binding | 51.6 | 2.1e-16 | 76 | 119 | 1 | 46 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 +g++++eE++++++++++lG++ W++ a+ ++ gRt++++k++w++ orange1.1g039708m 76 KGSFSPEEEKIIIELHAKLGNK-WARMAAQLP-GRTDNEIKNYWNT 119 799*******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 17.772 | 18 | 70 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.74E-30 | 20 | 117 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.3E-13 | 22 | 72 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 7.0E-15 | 23 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 3.4E-24 | 24 | 77 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.08E-11 | 25 | 70 | No hit | No description |
PROSITE profile | PS51294 | 25.638 | 71 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 4.0E-16 | 75 | 123 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.7E-15 | 76 | 119 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.2E-26 | 78 | 124 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.09E-11 | 78 | 119 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0009789 | Biological Process | positive regulation of abscisic acid-activated signaling pathway | ||||
GO:0043068 | Biological Process | positive regulation of programmed cell death | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0090406 | Cellular Component | pollen tube | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 512 aa Download sequence Send to blast |
MVSGGGGAEL GRGHHHHHQS LKKGPWTAAE DAILMEYVKK HGEGNWNAVQ KNSGLMRCGK 60 SCRLRWANHL RPNLKKGSFS PEEEKIIIEL HAKLGNKWAR MAAQLPGRTD NEIKNYWNTR 120 MKRRQRAGLP IYPQEIQDKA AAAFHLHQHH KRPQNQISPS PPAALLITSQ NPAYNNASLS 180 AMFNSFNFQS PTNLPLQNQA PGSCLSNPNN HAFQLFFDSA NANAGGFSLP PYHPPSSTTS 240 LMNENIQTQT TMQMPPFKVN SAPGNHEMSF SAMISQPIDF GTGLESELPS SQIPAVPKQA 300 SAPASSGSSG GFCAVGISST TDNNNDYQIS QKATCGGNSG LLDDLVQESN KISSNEKFKG 360 QFESFSDAGD KGKSVVDASS ADEEVNEGVE SMMANAADNN NQWDDFSSSQ SSIEMNKTNQ 420 EPLEEMQSMD DDLMSLLNNF PLSVPLPEWY PGTSTETSNV SSSSMTGGNQ EATTTDHQPN 480 TPPAPAPTTA ASPDLQWSLG SCCWNNMPGI C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-31 | 21 | 124 | 5 | 107 | B-MYB |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00287 | DAP | Transfer from AT2G32460 | Download |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447574.1 | 0.0 | transcription factor MYB101 | ||||
Refseq | XP_024951245.1 | 0.0 | transcription factor MYB101 | ||||
TrEMBL | A0A067EI05 | 0.0 | A0A067EI05_CITSI; Uncharacterized protein | ||||
TrEMBL | A0A2H5PXJ7 | 0.0 | A0A2H5PXJ7_CITUN; Uncharacterized protein | ||||
STRING | XP_006469761.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006447574.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5100 | 27 | 47 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G32460.1 | 1e-75 | myb domain protein 101 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g039708m |