PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g039654m | ||||||||
Common Name | CISIN_1g039654mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 226aa MW: 25205 Da PI: 9.724 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 69 | 4.3e-22 | 22 | 66 | 5 | 49 |
SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 5 nksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 n+sn qvtfskRr+g++KKA+EL++LC+a++a+i+fs+ k++ + orange1.1g039654m 22 NESNLQVTFSKRRTGLFKKASELCTLCGADIAIIVFSPGKKVFSF 66 89************************************9999887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 23.142 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 4.1E-31 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 1.57E-26 | 11 | 86 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.50E-34 | 11 | 80 | No hit | No description |
PRINTS | PR00404 | 4.6E-18 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.7E-24 | 21 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-18 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 4.6E-18 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009960 | Biological Process | endosperm development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 226 aa Download sequence Send to blast |
MSGMSSKKSK GRQKVEMVKM PNESNLQVTF SKRRTGLFKK ASELCTLCGA DIAIIVFSPG 60 KKVFSFGHPC VETIVDRYLT RNPPQISGTM QLIEAHRNAS VRELNMQLTQ VLNQLEIEKK 120 RGEELNQMRK ASQAQCWWEA PIEELNLPQL EQLKMSLEEL KKNVGKQAEK MLIQSSNPPQ 180 FFAGSSSNAG GMNLPFDPNN NAAVFNPNNM MPHPGYNPGF GHGFY* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3kov_A | 2e-15 | 11 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_B | 2e-15 | 11 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_I | 2e-15 | 11 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3kov_J | 2e-15 | 11 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_A | 2e-15 | 11 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_B | 2e-15 | 11 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_C | 2e-15 | 11 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_D | 2e-15 | 11 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_I | 2e-15 | 11 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
3p57_J | 2e-15 | 11 | 95 | 1 | 86 | Myocyte-specific enhancer factor 2A |
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Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: Expressed during the syncytial endosperm development. {ECO:0000269|PubMed:18334668}. | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the endosperm but not in the embryo. Detected in young siliques, roots, leaves, stems, young flowers and anthers. {ECO:0000269|PubMed:18334668}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Required for suppression of cellularization and promotion of nuclear proliferation during early endosperm development. The FERTILIZATION-INDEPENDENT SEED (FIS) polycomb complex is required for suppression of ALG62 expression at the end of the syncytial phase of endosperm development. {ECO:0000269|PubMed:18334668}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006487058.2 | 1e-165 | agamous-like MADS-box protein AGL62 | ||||
Swissprot | Q9FKK2 | 2e-72 | AGL62_ARATH; Agamous-like MADS-box protein AGL62 | ||||
TrEMBL | A0A067EEZ4 | 1e-166 | A0A067EEZ4_CITSI; Uncharacterized protein | ||||
STRING | XP_006487058.1 | 1e-163 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM86 | 28 | 390 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 3e-71 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g039654m |
Publications ? help Back to Top | |||
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