PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g039560m
Common NameCISIN_1g039560mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MIKC_MADS
Protein Properties Length: 345aa    MW: 38752.3 Da    PI: 4.992
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g039560mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.95.6e-28958150
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                       krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++g+l  +s
  orange1.1g039560m  9 KRIENNTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSGRLSHFS 58
                       79********************************************9997 PP
2K-box26.42.9e-101231911179
              K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqiee 79 
                        +++ e+lqqe+ +L++++++ + ++R +  + L   s+k++++ e++L + l+++ ++K+ ll ++++ 
  orange1.1g039560m 123 NNDIEELQQEVGRLQQQLQMAEDQIRIYEPDPLRITSIKDIESCEKNLVDTLTQVSQRKEFLLSNHLSS 191
                        67889**********************************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.955161IPR002100Transcription factor, MADS-box
SMARTSM004324.6E-38160IPR002100Transcription factor, MADS-box
CDDcd002651.15E-36275No hitNo description
SuperFamilySSF554558.24E-30280IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-26323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003197.0E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004043.9E-263859IPR002100Transcription factor, MADS-box
PfamPF014862.2E-6125199IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 345 aa     Download sequence    Send to blast
MGRVKLEIKR IENNTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SGRLSHFSGR  60
KRIEDVFSRY VNLPDQEREH AIIFPDQGRH PDIQNKEYLL RTLQQLRSEN DIALQLANPA  120
AINNDIEELQ QEVGRLQQQL QMAEDQIRIY EPDPLRITSI KDIESCEKNL VDTLTQVSQR  180
KEFLLSNHLS SYDPSSMQQQ AMPSSFENEV VGWLPGGGHN QAQIFESSAS LNELRDLSTT  240
MYDPLLQGTS SNAGPHSIGE CHVTNPSGEN FATWPQAFVS AGLHSAPLSP SLYPQIQQHG  300
MMGTDTNEIL PRDQVEIPIN APHVQADNEG ANYDQNKIPQ VNGQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A1e-16184185MEF2 CHIMERA
6bz1_B1e-16184185MEF2 CHIMERA
6bz1_C1e-16184185MEF2 CHIMERA
6bz1_D1e-16184185MEF2 CHIMERA
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in pollen. {ECO:0000269|PubMed:12949148}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms heterodimers with the MADS-box proteins AGL30 and AGL65 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024040406.10.0agamous-like MADS-box protein AGL104
SwissprotQ9LM461e-142AG104_ARATH; Agamous-like MADS-box protein AGL104
TrEMBLA0A067GQC20.0A0A067GQC2_CITSI; Uncharacterized protein
STRINGXP_006473013.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM21792365
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G22130.11e-130AGAMOUS-like 104
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]