PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g039443m
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 137aa    MW: 15622.8 Da    PI: 7.1639
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g039443mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH41.72e-13348555
                       HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                        n+ E+ RR ++++ +++L +l+P++      Kls  eiL +A+ YI +Lq
  orange1.1g039443m  3 RNIKEKHRRTHMKDLISQLASLIPSS-----SKLSMPEILDEATSYITHLQ 48
                       699**********************8.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.814147IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.4E-13266IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.4E-10348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.27E-14369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.28E-9352No hitNo description
SMARTSM003531.7E-10453IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 137 aa     Download sequence    Send to blast
AQRNIKEKHR RTHMKDLISQ LASLIPSSSK LSMPEILDEA TSYITHLQKN KESLERRRAL  60
LKEEDHYEPT VMNITTSGST LEVNLICGSN RNFMFHEIIS VLEEGAAEVI NVTQFNSGDR  120
VIFSVLSKVH FRPTQAE
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006446346.18e-98transcription factor bHLH167 isoform X1
TrEMBLA0A2H5PEW42e-96A0A2H5PEW4_CITUN; Uncharacterized protein
TrEMBLV4UBF82e-96V4UBF8_9ROSI; Uncharacterized protein
STRINGXP_006446346.13e-97(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23822167
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10585.16e-23bHLH family protein