PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g039390m | ||||||||
Common Name | CISIN_1g039390mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | ERF | ||||||||
Protein Properties | Length: 263aa MW: 29074.1 Da PI: 9.7033 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 68.5 | 1.2e-21 | 155 | 205 | 2 | 56 |
AP2 2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkklege 56 +y+GVr+++ +g+W+AeIrd + + +r++lg+f+tae+Aa+a+++a+++++g+ orange1.1g039390m 155 KYRGVRQRP-WGKWAAEIRDpF-----KaARVWLGTFDTAEDAARAYDEAALRFRGN 205 8********.**********66.....56*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.5E-33 | 154 | 213 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 4.17E-34 | 155 | 214 | No hit | No description |
SMART | SM00380 | 1.8E-38 | 155 | 218 | IPR001471 | AP2/ERF domain |
Pfam | PF00847 | 9.1E-15 | 155 | 204 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 25.488 | 155 | 212 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.83E-23 | 155 | 213 | IPR016177 | DNA-binding domain |
PRINTS | PR00367 | 3.1E-12 | 156 | 167 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.1E-12 | 178 | 194 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006970 | Biological Process | response to osmotic stress | ||||
GO:0009749 | Biological Process | response to glucose | ||||
GO:0009788 | Biological Process | negative regulation of abscisic acid-activated signaling pathway | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 263 aa Download sequence Send to blast |
MPNVANQRRD KKKKEGDQHH EERLSEVDQG MNYQPLMQYS DDQRRRWKER EMSAMVSALK 60 HVVAGDIDVV ASQPQQIQQH DNMNAITNVT STAANSDSSS SYGITSGQKR AREMEGGGVR 120 ATESSSTSTS TAMQATARYE YSSNEKSIVP EPRRKYRGVR QRPWGKWAAE IRDPFKAARV 180 WLGTFDTAED AARAYDEAAL RFRGNKAKLN FPENVKLVAI SSSSSSSSPS PSPSTNANPM 240 ATQLTVSDSP TTLLPISTST EPI |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2gcc_A | 8e-25 | 154 | 215 | 4 | 66 | ATERF1 |
3gcc_A | 8e-25 | 154 | 215 | 4 | 66 | ATERF1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 6 | 13 | QRRDKKKK |
2 | 7 | 14 | RRDKKKKE |
3 | 8 | 14 | RDKKKKE |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Ubiquitous with lower levels in seeds and siliques. {ECO:0000269|PubMed:16227468}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Negative regulator of the abscisic acid (ABA) signaling pathway involved in seed germination and in responses to stress conditions. Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250, ECO:0000269|PubMed:16227468}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00584 | DAP | Transfer from AT5G64750 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and stresses, including cold, drought and salt (PubMed:16227468, PubMed:26961720). Triggered by YY1 (PubMed:26961720). {ECO:0000269|PubMed:16227468, ECO:0000269|PubMed:26961720}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006464540.1 | 1e-174 | ethylene-responsive transcription factor ERF110 isoform X2 | ||||
Refseq | XP_024037134.1 | 1e-174 | ethylene-responsive transcription factor ERF110 isoform X2 | ||||
Swissprot | Q9FGF8 | 3e-41 | ABR1_ARATH; Ethylene-responsive transcription factor ABR1 | ||||
TrEMBL | A0A067F1R8 | 0.0 | A0A067F1R8_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006427894.1 | 1e-174 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10 | 28 | 1650 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G50080.1 | 3e-28 | ethylene response factor 110 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g039390m |
Publications ? help Back to Top | |||
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