PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g039289m | ||||||||
Common Name | CISIN_1g039289mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | FAR1 | ||||||||
Protein Properties | Length: 243aa MW: 28062.8 Da PI: 8.9161 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 73.1 | 6.2e-23 | 41 | 128 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 +fYn+YAke GFs+r+++sk k+++ i+++++vC keg+++++k +++r+r r gC akl+v k++ gk++v +++eHnH+l+ orange1.1g039289m 41 EFYNKYAKEGGFSIRINSSKICKESNDIIRKEYVCFKEGQARQSKVV--NRKRRRGIIRGGCSAKLVVVKSEFGKYMVRIFVEEHNHALS 128 6***************************************9998766..899999*********************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 9.1E-21 | 41 | 128 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 243 aa Download sequence Send to blast |
MNAQNVVGQS NCEDSLYVPE VALDRKPHKG QEFDTLDDAY EFYNKYAKEG GFSIRINSSK 60 ICKESNDIIR KEYVCFKEGQ ARQSKVVNRK RRRGIIRGGC SAKLVVVKSE FGKYMVRIFV 120 EEHNHALSSP RRVHLLRSHR SMSVVQKNLS QQLAVVSIPT CQQIGLFELQ AGGLQNMGCV 180 QRDFYNNDRN LWNELKGHDA DMLYEHFQSE KEKNSSFFYS IKAGCDDRIT HCFWADVVCR 240 RAY |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 88 | 92 | RKRRR |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY336943 | 0.0 | AY336943.1 Poncirus trifoliata NBS-LRR-type disease resistance protein-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024043082.1 | 1e-177 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A067DKT6 | 0.0 | A0A067DKT6_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006442061.1 | 1e-110 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM24003 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 1e-27 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g039289m |