PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g039198m
Common NameCISIN_1g039198mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 352aa    MW: 39148.8 Da    PI: 6.4221
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g039198mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding61.91.3e-191562148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd++l+d+++++G g+W++ ++  g++R++k+c++rw +yl
  orange1.1g039198m 15 KGPWTPEEDQKLIDYIRKHGHGSWRALPKLAGLNRCGKSCRLRWTNYL 62
                       79********************************************97 PP
2Myb_DNA-binding56.85.3e-1868113148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg++++eE++l+v++++ lG++ W++Ia +++ gRt++++k++w+++l
  orange1.1g039198m  68 RGKFSEEEEQLIVNLHAVLGNK-WSAIATRLP-GRTDNEIKNFWNTHL 113
                        89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129419.981062IPR017930Myb domain
SuperFamilySSF466891.17E-3112109IPR009057Homeodomain-like
SMARTSM007172.4E-161464IPR001005SANT/Myb domain
PfamPF002492.5E-181562IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.1E-251669IPR009057Homeodomain-like
CDDcd001673.12E-131762No hitNo description
PROSITE profilePS5129427.6463117IPR017930Myb domain
SMARTSM007176.3E-1767115IPR001005SANT/Myb domain
PfamPF002491.1E-1668113IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-2770117IPR009057Homeodomain-like
CDDcd001677.39E-1370113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009737Biological Processresponse to abscisic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
MESLQISDEI NNIKKGPWTP EEDQKLIDYI RKHGHGSWRA LPKLAGLNRC GKSCRLRWTN  60
YLRPDIKRGK FSEEEEQLIV NLHAVLGNKW SAIATRLPGR TDNEIKNFWN THLKKKLLQM  120
GIDPVTHRPR TDLNNVLANL PQLLAAANFA VGNLMNVPNS WDINALKLQS DATQLAKIQL  180
LHNIIQILST SPPPNIEASS LLGSSLGDNY NQLFEFLRMN SHQFHGNNGN GNGNVPFGFT  240
PQEPNQILSN LLNFDSASQL PHLGDYTNTS TSNTSQLGSS SYANNIPTSN QLPALVSVSS  300
ADCSALNQQI ETKINPNDIS NPSSTLTTFE ANWGDFMDDE ASQSYWRDFI E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A7e-32101172108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Specifically and transiently expressed in root endodermal cells overlying the early stages of lateral root primordia formation. {ECO:0000269|PubMed:24902892, ECO:0000269|PubMed:25482809}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as negative regulator of lateral root (LR) development. Required for normal auxin responses during LR development. May be part of a negative feedback loop stimulated specifically in the endodermis upon LR initiation to ensure that LRs are formed only in the correct place. {ECO:0000269|PubMed:24902892}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA), auxin and gravity in roots. {ECO:0000269|PubMed:24902892}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024043293.10.0transcription factor MYB53
SwissprotQ9S9Z24e-83MYB93_ARATH; Transcription factor MYB93
TrEMBLA0A067E7P20.0A0A067E7P2_CITSI; Uncharacterized protein
STRINGXP_006443249.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G16770.21e-88myb domain protein 9
Publications ? help Back to Top
  1. Gibbs DJ,Coates JC
    AtMYB93 is an endodermis-specific transcriptional regulator of lateral root development in arabidopsis.
    Plant Signal Behav, 2014. 9(10): p. e970406
    [PMID:25482809]