PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g039174m
Common NameCISIN_1g039174mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family AP2
Protein Properties Length: 352aa    MW: 39363.2 Da    PI: 9.0389
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g039174mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.21.7e-17226275155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        s+y+GV++++++grW+++I+d      + k+++lg f+ta  Aa+a+++a+ k++g
  orange1.1g039174m 226 SQYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTALAAARAYDRAAIKFRG 275
                        78*******************......55************************997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.7E-9226275IPR001471AP2/ERF domain
CDDcd000181.75E-11226282No hitNo description
SuperFamilySSF541711.37E-15226284IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.0E-16227283IPR001471AP2/ERF domain
SMARTSM003801.0E-30227289IPR001471AP2/ERF domain
PROSITE profilePS5103217.411227283IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 352 aa     Download sequence    Send to blast
PTTTFIFSFF LSSFVPFLFF SYKHVLLLLC VLLLTIIIII IIIIIISFLF VALPSFILHL  60
QRKTGTRKAP ASAMLDLNLS VYSGEYSNSM NRESSGSFHS SVVTSVGDCC SPASSSGGYI  120
FSILKDSNNN SGSNQNDHHH HQHHYQNDNV LTQGGGGGGG GGSSGIPFIP LIINTEVEEE  180
EEGNNNNDDE RDRVASLSQQ QEVQIQQHSH SRQMKKTRRG PRSKSSQYRG VTFYRRTGRW  240
ESHIWDCGKQ VYLGGFDTAL AAARAYDRAA IKFRGVDADI NFHVDDYQDD IRIMSNFTKD  300
EFVYSLRRQN TAAASRGTSK YRGVTLHKCG RWEARMGQYL GRKYVYLGAI Q*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.6910.0fruit
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006480582.10.0ethylene-responsive transcription factor RAP2-7-like isoform X2
TrEMBLA0A067EJJ50.0A0A067EJJ5_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006480582.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2288634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36920.22e-61AP2 family protein