PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g039095m
Common NameCISIN_1g039095mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 493aa    MW: 54951 Da    PI: 7.0682
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g039095mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.97.4e-054263223
                       EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                       +C+ Cgk F +   L  H+r H
  orange1.1g039095m 42 QCKVCGKDFESLKALYGHMRHH 63
                       7*******************99 PP
2zf-C2H213.80.000177293223
                       EETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                       +C+ Cgk   +  +L +H+r+H
  orange1.1g039095m 72 QCKECGKALLSAKSLSNHMRVH 93
                       8*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.0794163IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.5334168IPR007087Zinc finger, C2H2
SuperFamilySSF576679.74E-104293No hitNo description
PfamPF139122.7E-74265IPR007087Zinc finger, C2H2
PROSITE patternPS0002804363IPR007087Zinc finger, C2H2
SMARTSM003550.00727193IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.3657198IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.3E-57294IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS0002807393IPR007087Zinc finger, C2H2
SMARTSM003550.073344366IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.697344371IPR007087Zinc finger, C2H2
SuperFamilySSF576672.62E-7345366No hitNo description
PROSITE patternPS000280346366IPR007087Zinc finger, C2H2
SuperFamilySSF576672.62E-7401428No hitNo description
SMARTSM003551.4406428IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.974406428IPR007087Zinc finger, C2H2
PfamPF139123.5E-9406428IPR007087Zinc finger, C2H2
PROSITE patternPS000280408428IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 493 aa     Download sequence    Send to blast
MDSAKGDDGH ISYDLRENPK KSWKFSSFNH AASASASTQE SQCKVCGKDF ESLKALYGHM  60
RHHSRRERER IQCKECGKAL LSAKSLSNHM RVHSQKLRAC NESGAVKSLV LKKKRSKRKR  120
YNFIGSSSIS TLNESLSSVT EIDQEVVQTA ISLMMLSRGV QDWGKFCSSS EFSCNDSVTI  180
EVKSFGKKKR LLTNRAGCFV SNGNGCLLKK PRLEKLDSIV LYEKEEDECH EVGSGAESDE  240
GKKVKLEVFI EKFYEEGEFE MPKLDVKPGS VASDDEIGKE SSEDLMEEDG LDAEAGKRII  300
TSTSSKKVGF NACYAEYGGD SSSKAMCNAS DYDVFDDPQK ESEIRCQACN KIFCSRRALG  360
GHQRMHSAKR SSLPVKTTMF TETEPHSKLV KLECIEDLMQ RGNKEHTCRI CLKVFATGQA  420
LGGHKRAHLV KNLDNILQDI TVEQDYSDLS NDLDLNISNT LEEEVHGDAG SELWVVEGKQ  480
HKHERLLSMM AS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1110117LKKKRSKR
2113119KRSKRKR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006431269.10.0zinc finger protein 90
TrEMBLA0A067G2Z30.0A0A067G2Z3_CITSI; Uncharacterized protein
STRINGXP_006431269.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16241913
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.17e-15C2H2-like zinc finger protein