PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g039016m
Common NameCISIN_1g039016mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family MYB
Protein Properties Length: 368aa    MW: 40397.7 Da    PI: 7.828
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g039016mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding569.1e-181461148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                       +g+WT+eEd++l+  ++q+G g+W++ +++ g+ R++k+c++rw +yl
  orange1.1g039016m 14 KGPWTPEEDQKLLAFIEQHGHGSWRALPAKAGLQRCGKSCRLRWINYL 61
                       79********************************************97 PP
2Myb_DNA-binding53.36.6e-1767112148
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
    Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                        rg+++ +E++ +++++++lG++ W++Ia++++ +Rt++++k++w+++l
  orange1.1g039016m  67 RGKFSLQEEQTIIQLHALLGNR-WSAIAAHLP-KRTDNEIKNYWNTHL 112
                        89********************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-25564IPR009057Homeodomain-like
PROSITE profilePS5129417.651961IPR017930Myb domain
SuperFamilySSF466891.43E-3011108IPR009057Homeodomain-like
SMARTSM007176.8E-141363IPR001005SANT/Myb domain
PfamPF002493.7E-161461IPR001005SANT/Myb domain
CDDcd001677.90E-121661No hitNo description
PROSITE profilePS5129425.7962116IPR017930Myb domain
Gene3DG3DSA:1.10.10.601.6E-2665116IPR009057Homeodomain-like
SMARTSM007177.6E-1766114IPR001005SANT/Myb domain
PfamPF002493.0E-1667112IPR001005SANT/Myb domain
CDDcd001673.17E-1269112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MGRSPCCEKV GLKKGPWTPE EDQKLLAFIE QHGHGSWRAL PAKAGLQRCG KSCRLRWINY  60
LRPDIKRGKF SLQEEQTIIQ LHALLGNRWS AIAAHLPKRT DNEIKNYWNT HLKKRLTKMG  120
IDPVTHKPKT NPLGQPKDTA NLSHMAQWES ARLEAEARLV RESKLVSKPP PANHPHDHQL  180
GLGSSKAAAP AGRPQCLDVL KAWQGVVSGM FGAACRDNNL ESPTSTLNFN EHVLLSGPPA  240
VGLFSDNLVG NSIPCFEKSG QIIEGTKDNL DNSSMPIGLH EMTYATDGSV ATWFQDSFRT  300
AENIMEGLSS DLMICDSVDN DHNSSIIINA AESSTGNVGG NFDQENKNFW NGLMNLVSAS  360
TTWSPVF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-27121165108B-MYB
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in trichomes, stems, carpels, petals and stamens. {ECO:0000269|PubMed:18805951}.
Functional Description ? help Back to Top
Source Description
UniProtFunctions as a repressor of epidermal cell outgrowth and negatively regulate trichome branch formation (PubMed:18805951, PubMed:21070410). Acts as both a positive and negative regulator of cellular outgrowth. Promotes both trichome expansion and branch formation (PubMed:21070410). Coordinately with WIN1/SHN1, participates in the regulation of cuticle biosynthesis and wax accumulation in reproductive organs and trichomes. Functions in cuticle nanoridge formation in petals and stamens, and in morphogenesis of petal conical cells and trichomes (PubMed:23709630). May play a role in the regulation of cuticle formation in vegetative organs (PubMed:24169067). {ECO:0000269|PubMed:18805951, ECO:0000269|PubMed:21070410, ECO:0000269|PubMed:23709630, ECO:0000269|PubMed:24169067}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006438735.10.0transcription factor MYB106
SwissprotQ9LE631e-112MY106_ARATH; Transcription factor MYB106
TrEMBLA0A067GTE90.0A0A067GTE9_CITSI; Uncharacterized protein
TrEMBLA0A2H5N9D40.0A0A2H5N9D4_CITUN; Uncharacterized protein
TrEMBLV4TK160.0V4TK16_9ROSI; Uncharacterized protein
STRINGXP_006438735.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01140.11e-110myb domain protein 106