PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038951m
Common NameCISIN_1g038951mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family WRKY
Protein Properties Length: 304aa    MW: 33741 Da    PI: 4.5957
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038951mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY100.59.9e-32117173258
                        --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS
               WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 
                        dDgy+WrKYGqK++k+s++prsYY+Ct ++C++kk+vers +dp++++itYeg H h
  orange1.1g038951m 117 DDGYKWRKYGQKSIKNSPNPRSYYKCTNPRCSAKKQVERSCDDPDTLTITYEGLHLH 173
                        8******************************************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.807.1E-29113173IPR003657WRKY domain
SuperFamilySSF1182903.4E-26114173IPR003657WRKY domain
PROSITE profilePS5081126.349115176IPR003657WRKY domain
SMARTSM007742.4E-34116175IPR003657WRKY domain
PfamPF031063.4E-25117173IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MEKENDSWFE DDELVRELLD DETPFFVLPE EPTDEANRYS SPSNNEDQAT LKMVTSSAVY  60
SGPTIEDIDN ALSVAAGQEQ YSQAISKARI SLFEGGLGKI ENKYTLKIKS WGNGMADDGY  120
KWRKYGQKSI KNSPNPRSYY KCTNPRCSAK KQVERSCDDP DTLTITYEGL HLHFAYPYFI  180
LNQPQPQASP TTTKRKRTNP QAGETKEQIL DMQQNSNPSS FSNNNTECPS ASEATSPQGL  240
LEDVVPLMIR NPTGNNSNNN NNVSSNTSSC SSYRSPPTSP SSLSWSPNYS LSCFDMGINT  300
IIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A3e-191151731674Probable WRKY transcription factor 4
2lex_A3e-191151731674Probable WRKY transcription factor 4
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKT8276102e-47KT827610.1 Manihot esculenta WRKY transcription factor 35 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006480891.10.0probable WRKY transcription factor 49
TrEMBLA0A067E7N70.0A0A067E7N7_CITSI; Uncharacterized protein
STRINGXP_006480891.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM94052637
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G43290.14e-52WRKY DNA-binding protein 49