PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g038918m

Common Name

CISIN_1g038918mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

bHLH

Protein Properties

Length: 292aa MW: 32227.8 Da PI: 6.7895

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g038918m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	30.6	6.1e-10	204	247	7	55
HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 ++ ++RR+ri +++ L+el+P+ K++ +++LekA+ Y+k Lq orange1.1g038918m 204 IAAKNRRERISERLKILQELVPNG-----SKVDLVTMLEKAISYVKFLQ 247 5679*****************5.....5****************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.205	197	246	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	5.1E-12	198	254	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-13	199	256	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.71E-11	199	251	No hit	No description
SMART	SM00353	9.9E-12	203	252	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	4.8E-7	205	247	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 292 aa Download sequence Send to blast
MALARETCAF KENVYGDLSS PGSKKAPGFV KSIGISNTSS PSSANSNGYE FHNAEEARDS 60 LINFKSGHDH FMHANASNLL SFEQNETKDD EYSMWEGNFN QINQKYSSDH RLMEDFNCFD 120 TASNYGFMIN NSARDCHGDW LYTEATAVTD TILESGSQDA SSSLKRPNTG DSMQAVKKQC 180 AIAATKKTNN KQKTSAPPKD PQSIAAKNRR ERISERLKIL QELVPNGSKV DLVTMLEKAI 240 SYVKFLQLQV KVLATDEFWP VQGGKAPDIS QVREAIDAIL SSQRDRSSSS K*

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_006430635.1	0.0	transcription factor bHLH83
Swissprot	Q9FJ00	3e-63	BH086_ARATH; Putative transcription factor bHLH086
TrEMBL	A0A067FAC6	0.0	A0A067FAC6_CITSI; Uncharacterized protein
STRING	XP_006430635.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4260	28	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G37800.1	5e-61	RHD SIX-LIKE 1

Link Out ? help Back to Top
Phytozome	orange1.1g038918m

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281] Kim CM,Dolan L ROOT HAIR DEFECTIVE SIX-LIKE Class I Genes Promote Root Hair Development in the Grass Brachypodium distachyon. PLoS Genet., 2016. 12(8): p. e1006211 [PMID:27494519] Feng Y, et al. Ethylene promotes root hair growth through coordinated EIN3/EIL1 and RHD6/RSL1 activity in Arabidopsis. Proc. Natl. Acad. Sci. U.S.A., 2017. 114(52): p. 13834-13839 [PMID:29233944]