PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g038824m | ||||||||
Common Name | CISIN_1g038824mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | MYB_related | ||||||||
Protein Properties | Length: 187aa MW: 21406.7 Da PI: 9.7372 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 46.1 | 1.1e-14 | 39 | 80 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T++E+e ++++++ G++ W+ Ia+ ++ gRt++++k++w++ orange1.1g038824m 39 SFTPQEEEMIIRLHAAIGSR-WSIIAQQLP-GRTDNDVKNYWNT 80 79******************.*********.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 5.2E-11 | 17 | 44 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 4.24E-22 | 17 | 90 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 4.17 | 18 | 31 | IPR017877 | Myb-like domain |
PROSITE profile | PS51294 | 23.015 | 32 | 86 | IPR017930 | Myb domain |
SMART | SM00717 | 9.8E-14 | 36 | 84 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.23E-11 | 39 | 82 | No hit | No description |
Pfam | PF00249 | 1.4E-13 | 39 | 80 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 7.1E-21 | 45 | 83 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 187 aa Download sequence Send to blast |
MGRPPCCDKL NVKKGLRRCG KSCRLRWTNY LRPDLKHESF TPQEEEMIIR LHAAIGSRWS 60 IIAQQLPGRT DNDVKNYWNT KLRKKLTEMG IDPVTHKPFS QILADYGNIG GLPKSGTRIG 120 CLNRDMSKNA FMMQKPEQHE SPFQVFSNIS SHLMTMVSPN VEPIKDTLLN HYNDHSNSMD 180 LLAQLQA |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 9e-20 | 18 | 86 | 40 | 108 | B-MYB |
1h8a_C | 1e-19 | 18 | 86 | 60 | 128 | MYB TRANSFORMING PROTEIN |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | DEVELOPMENTAL STAGE: During anther development, first confined to meiocytes, tapetal and middle layer cells. At the microspore stage, mainly expressed in the tapetum and microspores. Later observed in developing pollen grains. {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. | |||||
Uniprot | TISSUE SPECIFICITY: Inflorescences-specific (PubMed:18397379). Accumulates in anthers, especially in tapetum and meiocytes/microsporocytes and microspores during anther development (PubMed:17666023, PubMed:18397379). {ECO:0000269|PubMed:17666023, ECO:0000269|PubMed:18397379}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for anther development and early tapetal function during microspore maturation (PubMed:18397379, PubMed:21957980). Regulates callose dissolution required for microspores release from the tetrads (PubMed:18397379). {ECO:0000269|PubMed:18397379, ECO:0000269|PubMed:21957980}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681813 | 6e-34 | LN681813.1 Cucumis melo genomic scaffold, anchoredscaffold00030. | |||
GenBank | LN713256 | 6e-34 | LN713256.1 Cucumis melo genomic chromosome, chr_2. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006439694.1 | 1e-134 | transcription factor MYB35 | ||||
Refseq | XP_006477532.2 | 1e-134 | transcription factor MYB35-like, partial | ||||
Swissprot | Q9LSI7 | 2e-51 | MYB35_ARATH; Transcription factor MYB35 | ||||
TrEMBL | A0A067G323 | 1e-139 | A0A067G323_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006477532.1 | 1e-133 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4 | 28 | 2646 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G28470.1 | 9e-54 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g038824m |
Publications ? help Back to Top | |||
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