PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g038778m | ||||||||
Common Name | CISIN_1g038778mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 127aa MW: 14806.1 Da PI: 10.4145 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 97.3 | 2.2e-30 | 5 | 127 | 3 | 124 |
NAM 3 pGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 +GfrF+P++e++ + L+kk + +++ ++ik++ di+++ePwdL +k+++e++ +yfF+k ky++++r++r t++gyWk tg+ + orange1.1g038778m 5 MGFRFQPSNEQIF-CLLEKKRLNPHFSH-HTIKDIdDICSLEPWDLAgaSKTESEDRVCYFFCKPYYKYKKSTRAHRRTNAGYWKVTGRGSK 94 7**********99.88999999999888.77***999*********8533777788899********************************* PP NAM 92 vlskkgelvglkktLvf.ykgrapkgektdWvmh 124 +++ ++ l g+kk+L+f y+g a+k k Wvmh orange1.1g038778m 95 IKT-RNGLSGTKKILTFkYHGPASKKAKIGWVMH 127 **9.8889*********559999999*******9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 30.435 | 3 | 127 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 6.02E-30 | 4 | 127 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.5E-14 | 5 | 127 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 127 aa Download sequence Send to blast |
MESLMGFRFQ PSNEQIFCLL EKKRLNPHFS HHTIKDIDDI CSLEPWDLAG ASKTESEDRV 60 CYFFCKPYYK YKKSTRAHRR TNAGYWKVTG RGSKIKTRNG LSGTKKILTF KYHGPASKKA 120 KIGWVMH |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 3e-14 | 6 | 127 | 20 | 138 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 3e-14 | 6 | 127 | 20 | 138 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 3e-14 | 6 | 127 | 20 | 138 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 3e-14 | 6 | 127 | 20 | 138 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-14 | 6 | 127 | 23 | 141 | NAC domain-containing protein 19 |
3swm_B | 2e-14 | 6 | 127 | 23 | 141 | NAC domain-containing protein 19 |
3swm_C | 2e-14 | 6 | 127 | 23 | 141 | NAC domain-containing protein 19 |
3swm_D | 2e-14 | 6 | 127 | 23 | 141 | NAC domain-containing protein 19 |
3swp_A | 2e-14 | 6 | 127 | 23 | 141 | NAC domain-containing protein 19 |
3swp_B | 2e-14 | 6 | 127 | 23 | 141 | NAC domain-containing protein 19 |
3swp_C | 2e-14 | 6 | 127 | 23 | 141 | NAC domain-containing protein 19 |
3swp_D | 2e-14 | 6 | 127 | 23 | 141 | NAC domain-containing protein 19 |
4dul_A | 3e-14 | 6 | 127 | 20 | 138 | NAC domain-containing protein 19 |
4dul_B | 3e-14 | 6 | 127 | 20 | 138 | NAC domain-containing protein 19 |
Search in ModeBase |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024045631.1 | 2e-91 | uncharacterized protein LOC112100396 | ||||
TrEMBL | A0A067DGK8 | 4e-91 | A0A067DGK8_CITSI; Uncharacterized protein (Fragment) | ||||
STRING | XP_006476702.1 | 1e-89 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13336 | 4 | 29 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G35580.1 | 4e-20 | NAC transcription factor-like 9 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g038778m |