PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

orange1.1g038715m

Common Name

CISIN_1g038715mg

Organism

Citrus sinensis

Taxonomic ID

2711

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus

Family

C2H2

Protein Properties

Length: 333aa MW: 36218.1 Da PI: 9.2257

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
orange1.1g038715m	genome	ICGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.1	6.5e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y C+ C+k F r nL+ H + H orange1.1g038715m 6 YICEVCHKGFQRDQNLQLHRKGH 28 89******************988 PP
2	zf-C2H2	13.3	0.00025	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k++ +s+ k H + + orange1.1g038715m 82 WKCDKCSKCYAVQSDWKAHTKIC 104 58*****************9987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.2E-5	5	28	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	5.1E-5	5	28	No hit	No description
PROSITE profile	PS50157	10.429	6	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.051	6	28	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	300	47	77	IPR015880	Zinc finger, C2H2-like
SuperFamily	SSF57667	5.1E-5	77	102	No hit	No description
SMART	SM00355	100	82	109	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 333 aa Download sequence Send to blast
MATNRYICEV CHKGFQRDQN LQLHRKGHNL PWKLMQRPTT QVKKGVYVCP KPNCVHHHPS 60 RALGDLTGVK KHFCRKHGEK KWKCDKCSKC YAVQSDWKAH TKICGTREHR CDCGIIFSSQ 120 NLAASGGMAQ SQAQELFSSS MPSTDSDSNT NIRMNPSISR DNIENSLRPL SMSSVGVMVS 180 SNLDPILTSR VSKPYLSSVC GSNACAMAIG SSFTSSTALL QKAAEMGTMM RFTVFSSSSI 240 TSSGFLRQGS SNGLYVDKNL EPGDQRESCS LLQSKNGNAA SALVQVHMGG SEKMTADFLW 300 AEVEQPVGSG HSNYGKKRSL GGTVVDLGYS NE*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	8e-18	78	121	3	46	Zinc finger protein JACKDAW
5b3h_F	8e-18	78	121	3	46	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000305}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024448903.1	1e-135	protein indeterminate-domain 2-like
Swissprot	O22759	4e-73	IDD12_ARATH; Protein indeterminate-domain 12
TrEMBL	A0A067D8T5	0.0	A0A067D8T5_CITSI; Uncharacterized protein
STRING	XP_006420832.1	0.0	(Citrus clementina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM18017	8	9

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50700.1	1e-71	indeterminate(ID)-domain 2

Link Out ? help Back to Top
Phytozome	orange1.1g038715m

Publications ? help Back to Top
Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]