PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g038703m | ||||||||
Common Name | CISIN_1g038703mg, LOC102627678 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | NAC | ||||||||
Protein Properties | Length: 200aa MW: 22921.2 Da PI: 10.0795 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 121.5 | 7.8e-38 | 18 | 145 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykv.ePwdLp.kkvka.eekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lp G+rF+P+ +e++v+yL+kk+ +++l+ ++ik++d+y + +P++Lp ++k+ + +e yfF++ +++ + +++r+tksgyWk tgk orange1.1g038703m 18 LPLGYRFSPNGQEIIVQYLTKKILNQRLPS-NIIKDIDLYAYdHPRQLPiGEFKNcKPDEGYFFTQLENRDGK-GQPKRTTKSGYWKDTGKV 107 699**************************9.89******98879*****656665355588******999876.58999************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++++ +++ vg kk+Lvfy+g+ p+g++++Wvmhe+r+ orange1.1g038703m 108 EQIIW-NNSIVGFKKILVFYEGKPPTGTRSRWVMHEFRV 145 ****9.8999***************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 7.98E-39 | 14 | 174 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 38.339 | 18 | 174 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.0E-21 | 19 | 145 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 200 aa Download sequence Send to blast |
MASQGVFGSI NQEEEFDLPL GYRFSPNGQE IIVQYLTKKI LNQRLPSNII KDIDLYAYDH 60 PRQLPIGEFK NCKPDEGYFF TQLENRDGKG QPKRTTKSGY WKDTGKVEQI IWNNSIVGFK 120 KILVFYEGKP PTGTRSRWVM HEFRVNPSYL SAFALDITTQ TEVVNYVACK IHHKKESGNK 180 RSEAGKKKNL PVRKKTKAC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3ulx_A | 2e-29 | 11 | 180 | 8 | 174 | Stress-induced transcription factor NAC1 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006484176.1 | 1e-148 | NAC domain-containing protein 83 isoform X1 | ||||
TrEMBL | A0A067GSZ9 | 1e-147 | A0A067GSZ9_CITSI; Uncharacterized protein | ||||
STRING | XP_006484176.1 | 1e-148 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM17601 | 7 | 10 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07680.1 | 5e-33 | NAC domain containing protein 80 |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g038703m |
Entrez Gene | 102627678 |