PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038614m
Common NameCISIN_1g038614mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family C2H2
Protein Properties Length: 264aa    MW: 29064.3 Da    PI: 7.2667
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038614mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.20.0012152174123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        ykC+ C+k F++   L  H  +H
  orange1.1g038614m 152 YKCKTCKKEFRSYQALGGHKASH 174
                        9***********99999888877 PP
2zf-C2H2130.0003202224123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kCp C+k+F +   L  H + H
  orange1.1g038614m 202 FKCPFCDKVFDSGQALGGHKKIH 224
                        89*********999999999888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.83E-9151224No hitNo description
PROSITE profilePS5015710.076152179IPR007087Zinc finger, C2H2
SMARTSM003550.054152174IPR015880Zinc finger, C2H2-like
PfamPF139123.7E-12152176IPR007087Zinc finger, C2H2
PROSITE patternPS000280154174IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.600.001200224IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139123.4E-9201224IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.076202224IPR007087Zinc finger, C2H2
SMARTSM003550.008202224IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280204224IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    Send to blast
MGGHMRSHFA KHPISSSNIN PSPPKYPSSS SSLSNMQTYR SVNNRPFSGL EDESEAESSR  60
NLTKARSKRP LRTIESVSNS VTENFLSDRE VAMCLLKLSR DNWLQKDKQV VVAEAVVDED  120
EYVRGKSDDG DNDEEEDKEE DESSLVSRTN KYKCKTCKKE FRSYQALGGH KASHKKIKIH  180
HNGSSDAAAA GGDAVVMDQR VFKCPFCDKV FDSGQALGGH KKIHFTYLAT PITKITSSAK  240
SSGAKFIDLN LPAPEDDSEV SQV*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024044148.11e-118zinc finger protein ZAT9
TrEMBLA0A067E3Y00.0A0A067E3Y0_CITSI; Uncharacterized protein
STRINGXP_006421633.11e-144(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14652893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60580.12e-21C2H2-like zinc finger protein