PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g038558m | ||||||||
Common Name | CISIN_1g038558mg | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 370aa MW: 39139 Da PI: 8.4896 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 33.7 | 6.5e-11 | 303 | 348 | 6 | 55 |
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri ++ +L++l+P+ +k s +++L +Av++Ik Lq orange1.1g038558m 303 SIAERERRTRISRKLKKLQDLVPNM----DKQTSYSDMLDLAVQHIKGLQ 348 689*********************7....688*****************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 13.846 | 297 | 347 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 7.33E-14 | 300 | 362 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 9.51E-11 | 301 | 352 | No hit | No description |
Gene3D | G3DSA:4.10.280.10 | 5.3E-13 | 302 | 359 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-8 | 303 | 348 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 2.2E-11 | 303 | 353 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010119 | Biological Process | regulation of stomatal movement | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 370 aa Download sequence Send to blast |
MYHHPSSSSS SQQNPMGPTT AAGVGGSGGL TRYVSAPGSL LRTAVDSIIG SSSPSPSPSQ 60 PSIVSSSHSH QHHHYFAGGS TTTAGGDSSP VSSFTTTEST CKVNSSNAPG NNTKSGLQRS 120 YGLNEIPQTR AASSSLLRQR SSPAGFLSHF ASETVGFSVT RETGNYNSQG RSSGGLGVSR 180 LKSQLSFTGQ DSLSQISEES ENGIDGVSSG SGRQNATHSY STASFGMDSW ENGTSIVFSA 240 PPSKRTKTLD GDIFNCLNAL DSQFTMPQTS LEMATVDNLL NIPEDSVPCK IRAKRGCATH 300 PRSIAERERR TRISRKLKKL QDLVPNMDKQ TSYSDMLDLA VQHIKGLQNQ VENLHKDLEH 360 CTCGCKPTS* |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006443135.1 | 0.0 | transcription factor bHLH128 isoform X1 | ||||
Refseq | XP_006478879.1 | 0.0 | transcription factor bHLH128 isoform X1 | ||||
Swissprot | Q8H102 | 1e-96 | BH128_ARATH; Transcription factor bHLH128 | ||||
TrEMBL | A0A067E9F0 | 0.0 | A0A067E9F0_CITSI; Uncharacterized protein | ||||
STRING | XP_006478879.1 | 0.0 | (Citrus sinensis) | ||||
STRING | XP_006443135.1 | 0.0 | (Citrus clementina) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM11777 | 26 | 31 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G05805.1 | 3e-79 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g038558m |
Publications ? help Back to Top | |||
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