PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038451m
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 527aa    MW: 57172.7 Da    PI: 9.3537
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038451mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH55.97.5e-18221270255
                        HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        r +h++ E+rRR++iN++f+ Lrel+P++    ++K +Ka+ L +++eYI+ Lq
  orange1.1g038451m 221 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIQFLQ 270
                        889*************************9....9*******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.280.107.8E-24216291IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-19217287IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088816.939219269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.8E-15221270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.81E-16221274No hitNo description
SMARTSM003531.1E-13225275IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006351Biological Processtranscription, DNA-templated
GO:0009742Biological Processbrassinosteroid mediated signaling pathway
GO:1902448Biological Processpositive regulation of shade avoidance
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 527 aa     Download sequence    Send to blast
GFLKTHDFLQ VGKINAKEES TLEITSIVEK PPPPAPPPPS SSSVEHNLPG GIGTYSISHV  60
SYFGQKVPKP EGSLFAVAQT SSTEKNDENS NCSSYTGSGF TLWEESAVKK GKTGKENAGE  120
RAIGRGEATV NVGQWVSQSS STNNSHRNSF SSLSCSQPLG MKSQSFMEMI KSAKGSTHDD  180
DLDDADEFIL KRENSTTTNH KGDLRVKVEG KSNDQKPNTP RSKHSATEQR RRSKINDRFQ  240
MLRELIPHSD QKRDKASFLL EVIEYIQFLQ EKVHKYEGPY VGWNPERAKL APWKNNHKHA  300
ESYVDQSQGI NNGSATALVF AAKFNEKNVS ISPAIPGSAQ KPVESDMTSA STFKTMDPQP  360
GITNKAMPFP MSLQPNCYKP VRNGGAAASL RPRLASDAEN TTSQPQTLEC HTRSCTGDMP  420
MSNNKKLKEQ ELTVEGGRIN ISTAYSQGLL KTLTQALQSS GVDLSQASVS VQIDLGKRAT  480
QAPITLASNL KGNEVPASNQ GTTGSRDRNG GEGSNQALKK QKIDKC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Csi.175610.0fruit
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtPositive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00498DAPTransfer from AT5G08130Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024956313.10.0transcription factor BIM1 isoform X2
SwissprotQ9LEZ31e-106BIM1_ARATH; Transcription factor BIM1
TrEMBLA0A2H5Q4P20.0A0A2H5Q4P2_CITUN; Uncharacterized protein
STRINGXP_006485716.10.0(Citrus sinensis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM69672744
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G08130.51e-110bHLH family protein
Publications ? help Back to Top
  1. Liang T, et al.
    UVR8 Interacts with BES1 and BIM1 to Regulate Transcription and Photomorphogenesis in Arabidopsis.
    Dev. Cell, 2018. 44(4): p. 512-523.e5
    [PMID:29398622]