PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | orange1.1g038451m | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
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Family | bHLH | ||||||||
Protein Properties | Length: 527aa MW: 57172.7 Da PI: 9.3537 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 55.9 | 7.5e-18 | 221 | 270 | 2 | 55 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lrel+P++ ++K +Ka+ L +++eYI+ Lq orange1.1g038451m 221 RSKHSATEQRRRSKINDRFQMLRELIPHS----DQKRDKASFLLEVIEYIQFLQ 270 889*************************9....9*******************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.280.10 | 7.8E-24 | 216 | 291 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 6.41E-19 | 217 | 287 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
PROSITE profile | PS50888 | 16.939 | 219 | 269 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 2.8E-15 | 221 | 270 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
CDD | cd00083 | 8.81E-16 | 221 | 274 | No hit | No description |
SMART | SM00353 | 1.1E-13 | 225 | 275 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006351 | Biological Process | transcription, DNA-templated | ||||
GO:0009742 | Biological Process | brassinosteroid mediated signaling pathway | ||||
GO:1902448 | Biological Process | positive regulation of shade avoidance | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 527 aa Download sequence Send to blast |
GFLKTHDFLQ VGKINAKEES TLEITSIVEK PPPPAPPPPS SSSVEHNLPG GIGTYSISHV 60 SYFGQKVPKP EGSLFAVAQT SSTEKNDENS NCSSYTGSGF TLWEESAVKK GKTGKENAGE 120 RAIGRGEATV NVGQWVSQSS STNNSHRNSF SSLSCSQPLG MKSQSFMEMI KSAKGSTHDD 180 DLDDADEFIL KRENSTTTNH KGDLRVKVEG KSNDQKPNTP RSKHSATEQR RRSKINDRFQ 240 MLRELIPHSD QKRDKASFLL EVIEYIQFLQ EKVHKYEGPY VGWNPERAKL APWKNNHKHA 300 ESYVDQSQGI NNGSATALVF AAKFNEKNVS ISPAIPGSAQ KPVESDMTSA STFKTMDPQP 360 GITNKAMPFP MSLQPNCYKP VRNGGAAASL RPRLASDAEN TTSQPQTLEC HTRSCTGDMP 420 MSNNKKLKEQ ELTVEGGRIN ISTAYSQGLL KTLTQALQSS GVDLSQASVS VQIDLGKRAT 480 QAPITLASNL KGNEVPASNQ GTTGSRDRNG GEGSNQALKK QKIDKC* |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Csi.17561 | 0.0 | fruit |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed constitutively in roots. {ECO:0000269|PubMed:12679534}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Positive brassinosteroid-signaling protein. Transcription factor that bind specifically to the DNA sequence 5'-CANNTG-3'(E box). Can bind individually to the promoter as a homodimer or synergistically as a heterodimer with BZR2/BES1. Does not itself activate transcription but enhances BZR2/BES1-mediated target gene activation. {ECO:0000269|PubMed:15680330}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00498 | DAP | Transfer from AT5G08130 | Download |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by cold treatment. {ECO:0000269|PubMed:12679534}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024956313.1 | 0.0 | transcription factor BIM1 isoform X2 | ||||
Swissprot | Q9LEZ3 | 1e-106 | BIM1_ARATH; Transcription factor BIM1 | ||||
TrEMBL | A0A2H5Q4P2 | 0.0 | A0A2H5Q4P2_CITUN; Uncharacterized protein | ||||
STRING | XP_006485716.1 | 0.0 | (Citrus sinensis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6967 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G08130.5 | 1e-110 | bHLH family protein |
Link Out ? help Back to Top | |
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Phytozome | orange1.1g038451m |
Publications ? help Back to Top | |||
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