PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038327m
Common NameCISIN_1g038327mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family M-type_MADS
Protein Properties Length: 91aa    MW: 10679.2 Da    PI: 10.9819
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038327mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF30.64.3e-10236135
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaev 35
                       krien+  r +tfskR+     KA+EL +L++ae+
  orange1.1g038327m  2 KRIENEDDRLITFSKRKSRTYNKASELVTLTGAEI 36
                       79*******************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd001202.66E-11137No hitNo description
PROSITE profilePS5006613.274136IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.22E-9151IPR002100Transcription factor, MADS-box
PfamPF003192.0E-11337IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 91 aa     Download sequence    Send to blast
MKRIENEDDR LITFSKRKSR TYNKASELVT LTGAEIGHPS IEAVANRFLG QTRRQMTTLL  60
LVEAQRQKER GNFLKQMTKG KETQRWWETP V
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012072479.12e-29agamous-like MADS-box protein AGL61
TrEMBLA0A067GEJ34e-60A0A067GEJ3_CITSI; Uncharacterized protein (Fragment)
STRINGXP_006421333.11e-30(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM8628390
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24840.13e-14AGAMOUS-like 61