PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID orange1.1g038298m
Common NameCISIN_1g038298mg
Organism
Citrus sinensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Sapindales; Rutaceae; Aurantioideae; Citrus
Family bHLH
Protein Properties Length: 260aa    MW: 29234.6 Da    PI: 9.8344
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
orange1.1g038298mgenomeICGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.2e-1197144355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                        + h ++Er+RR+++N+ f  L  ++P       k ++Ka++Le +++++k+Lq
  orange1.1g038298m  97 QEHVIAERKRREKMNQQFIALSAVIPGI-----KQMNKASVLEGTIKHLKELQ 144
                        6799**********************97.....57*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.72394143IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.7E-997144IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.2E-1498154IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-1498158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.58E-1099148No hitNo description
SMARTSM003537.5E-13100149IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 260 aa     Download sequence    Send to blast
MDVDQDSTFI HQYQGNSQSN STTHGSMPFS GLISFQDTDS LASYYSQMSN PNSEYYCTIK  60
SEDKRASDEN LMAMKTRIVN KPGQGNRVAS RSPLQAQEHV IAERKRREKM NQQFIALSAV  120
IPGIKQMNKA SVLEGTIKHL KELQERGKKL VEHTKRKAPE SVVSVKRSQQ TLPDIVVRVS  180
DNNVLIRIHC EKQNIGFISN IVSEIEKLHL VVINSRTIPF GNYALDITVV AQMEVEFCLT  240
VKELVKNLRL ALSKFIKLG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102107ERKRRE
2103108RKRREK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in flowers. {ECO:0000269|PubMed:12679534}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By ethylene (ACC) and jasmonic acid (JA) treatments. {ECO:0000269|PubMed:12679534}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006441040.10.0transcription factor NAI1
SwissprotQ9T0725e-46BH025_ARATH; Transcription factor bHLH25
TrEMBLA0A067DCN30.0A0A067DCN3_CITSI; Uncharacterized protein
STRINGXP_006441040.10.0(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM2296534
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-48bHLH family protein